Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0823
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex determina...    29   1.9  
Z81476-1|CAB03921.2|  431|Caenorhabditis elegans Hypothetical pr...    29   3.3  

>Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical protein
            K03H1.2 protein.
          Length = 1131

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 78   WKTHRNSASVGSGNYMNIAAINKVK 152
            W+TH+ SA   + NY+++ A+ KV+
Sbjct: 928  WRTHKYSAKWCADNYLHVKALKKVR 952


>AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex determination
            protein MOG-1 protein.
          Length = 1131

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 78   WKTHRNSASVGSGNYMNIAAINKVK 152
            W+TH+ SA   + NY+++ A+ KV+
Sbjct: 928  WRTHKYSAKWCADNYLHVKALKKVR 952


>Z81476-1|CAB03921.2|  431|Caenorhabditis elegans Hypothetical
           protein C25F9.1 protein.
          Length = 431

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 77  IITCFYTWILLQLVPYTRWHSLPSC 3
           +ITCF+  + L++VP T+W    SC
Sbjct: 155 LITCFFN-LKLEIVPSTKWRPPSSC 178


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,964,914
Number of Sequences: 27780
Number of extensions: 281921
Number of successful extensions: 580
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)