Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0823
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11650.1 68417.m01862 osmotin-like protein (OSM34) nearly ide...    28   5.4  
At4g08290.2 68417.m01369 nodulin MtN21 family protein similar to...    27   7.2  
At4g08290.1 68417.m01370 nodulin MtN21 family protein similar to...    27   7.2  
At3g43990.1 68416.m04709 bromo-adjacent homology (BAH) domain-co...    27   7.2  
At2g18760.1 68415.m02184 SNF2 domain-containing protein / helica...    27   9.5  

>At4g11650.1 68417.m01862 osmotin-like protein (OSM34) nearly
           identical to SP|P50700|OSL3_ARATH Osmotin-like protein
           OSM34 precursor {Arabidopsis thaliana}; contains Pfam
           profile PF00314: Thaumatin family
          Length = 244

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 436 ATVASGRILNTAPYTIFFIA*MGGRAHSQPGVEWLLE 326
           AT A+  ILN   YT++  A  GG      G  W L+
Sbjct: 20  ATAATFEILNQCSYTVWAAASPGGGRRLDAGQSWRLD 56


>At4g08290.2 68417.m01369 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 282

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 128 IHIISTSYTSAISVSLPIITCFYTWIL 48
           +++ S +YTSAI   LP +T    WIL
Sbjct: 98  MNMTSATYTSAIMNILPSVTFIIAWIL 124


>At4g08290.1 68417.m01370 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 384

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 128 IHIISTSYTSAISVSLPIITCFYTWIL 48
           +++ S +YTSAI   LP +T    WIL
Sbjct: 98  MNMTSATYTSAIMNILPSVTFIIAWIL 124


>At3g43990.1 68416.m04709 bromo-adjacent homology (BAH)
           domain-containing protein contains Pfam profile PF01426:
           BAH domain
          Length = 380

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = -3

Query: 521 IKD*EGRRKENQVQVY*KVSAEKDQLRWRHCSKWKDFKYSTIYYFFYCLDGWTSSQPTWC 342
           IKD   + K+  V++  +    ++ +  +H  KWK      I++ F+C + +  S    C
Sbjct: 106 IKDIYSQEKDGLVKMEVQWFYRREDIEEKHFGKWKTENPREIFFSFHCDEVFAESVKYKC 165


>At2g18760.1 68415.m02184 SNF2 domain-containing protein / helicase
           domain-containing protein similar to SP|Q03468 Excision
           repair protein ERCC-6 (Cockayne syndrome protein CSB)
           {Homo sapiens}; contains PFam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain
          Length = 1187

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 9   G*GVPSCIGDKL**YPRVKASYYWKTHRNSASVGSGNYMNI 131
           G  +P CI  KL  Y RV   + W+ H   A    G+ M +
Sbjct: 374 GLNIPECIFRKLFDYQRVGVQWLWELHCQRAGGIIGDEMGL 414


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,330,869
Number of Sequences: 28952
Number of extensions: 267748
Number of successful extensions: 504
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)