Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0821
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    28   0.90 
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    27   2.7  
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc...    26   3.6  
SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe...    26   4.8  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    26   4.8  
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    26   4.8  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    25   6.3  
SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces po...    25   6.3  
SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz...    25   6.3  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    25   8.4  

>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -2

Query: 428 FFMQCVIQIYVICGHDIGYGHFQSFQSQ*RTVVCYKHEPIKFCKTSI 288
           F  +CV++ Y     + G   F+SF       + ++HE I+FCK ++
Sbjct: 140 FLRKCVVE-YEQFSFEQGVQFFKSFLQYRAPSMDFQHEGIEFCKINV 185


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 268 WKHTLRHILVLQNFIGSCL 324
           WK TL  +LVLQ  I  CL
Sbjct: 124 WKETLSSLLVLQGNISQCL 142


>SPCC188.06c |srp54||signal recognition particle subunit
           Srp54|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 522

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 58  NTKRVVKLRFSDELVFIVDSKFRVFSLKK 144
           N KR+V+    DEL  +VD K   F+ KK
Sbjct: 70  NGKRIVQKAVFDELCSLVDPKVDAFTPKK 98


>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 131 NTRNLLSTMKTNSSENRNFTTLLVFFNKYLYHYVSSWQ 18
           ++RN LS M+       NF T +V  +K   HY+ + Q
Sbjct: 127 SSRNRLSNMELEVLRALNFDTHIVIPHKLAIHYLQTLQ 164


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -1

Query: 276 MFPNPRWVFNDVAFRLIVFIIFWGNINLHWFSCVHFEHYWR 154
           M+P  RW     AF  + F+ F   ++  + +C  +   WR
Sbjct: 70  MYPILRWPLMFTAFLCLTFVAFLYLLDRLYINCYEYFIVWR 110


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 77  FTTLLVFFNKYLYHYVSSWQRH 12
           F+++L  F   LY Y+S+W+ +
Sbjct: 141 FSSILTQFASLLYFYISTWEEY 162


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 195 LHWFSCVHFEHYWRV 151
           + WFSC HF   W+V
Sbjct: 345 MSWFSCNHFYPEWKV 359


>SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 408 YHTLHKKLSEAVASAGLPDIAGSQDIPVLDTIWVNQKQKKL 530
           Y+    K  EA+    LPD+  +    +++T++ N+K K L
Sbjct: 121 YYLDRLKFEEAINHLLLPDVLPNFPDKIIETLYSNEKYKFL 161


>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 265

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/18 (44%), Positives = 16/18 (88%)
 Frame = -2

Query: 92  SENRNFTTLLVFFNKYLY 39
           +E++N +T L+F+NK++Y
Sbjct: 56  NESQNVSTRLIFWNKWIY 73


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 77  FTTLLVFFNKYLYHYVSSWQRHFS 6
           F++ LV   K   H++ +W RH S
Sbjct: 401 FSSFLVVITKVPLHFLPTWLRHVS 424


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,564,755
Number of Sequences: 5004
Number of extensions: 55473
Number of successful extensions: 149
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)