Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0821
         (597 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0115 - 915142-915321,915397-915631,916301-916386,916474-91...    45   4e-05
01_01_0802 + 6246267-6247541,6247625-6247682,6247806-6248129,624...    31   0.70 
05_06_0230 + 26585439-26586608                                         28   4.9  
11_06_0676 + 26152192-26152367,26152669-26152708,26152857-261529...    27   8.6  
01_06_1586 - 38465662-38466267,38467986-38468079,38468169-38468455     27   8.6  

>03_01_0115 -
           915142-915321,915397-915631,916301-916386,916474-916590,
           917271-917591,918386-918772
          Length = 441

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
 Frame = +3

Query: 261 LDLETYAASYTGFAKLYRLMFVADHC--PSLRLEALKMAISYVMTTYNVNLYHTLHKKLS 434
           LD+E YAA YTG  +L RL+F+A+ C   ++ LEAL+MA   +    +   +  +  K++
Sbjct: 34  LDVEAYAAQYTGRTRLARLLFIAERCGVEAVELEALRMAYDEIKRGEDTMFHREVTNKIN 93


>01_01_0802 +
           6246267-6247541,6247625-6247682,6247806-6248129,
           6248321-6248355
          Length = 563

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 154 PPIMFEMNTAEPMQVDI-PPEDNENNETECYVVENPP 261
           PP+   ++  EP  +DI PP++N  ++ E YV  + P
Sbjct: 420 PPVQETLHNPEPESIDIEPPKENTADDNERYVGSSSP 456


>05_06_0230 + 26585439-26586608
          Length = 389

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +1

Query: 25  DET***RYLLKNTKRVVKL-RFSDELVFIVDSKFRVFSLKK 144
           DET   RYL+++ K+++ + R+S     +  S FRVF +KK
Sbjct: 235 DETVLARYLVESRKKLLMVVRYSSGRQHLPTSAFRVFQMKK 275


>11_06_0676 +
           26152192-26152367,26152669-26152708,26152857-26152966,
           26153886-26153934,26154157-26154206,26154606-26155150,
           26155583-26155743,26156231-26156440,26156525-26156690,
           26156765-26156869,26157465-26157760
          Length = 635

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 169 EMNTAEPMQVDIPPEDNENNETECYVVENPPWIWKHTLRH 288
           ++NT E   V    +D E    EC+ ++    +WK T++H
Sbjct: 357 QINTVEEF-VKALNKDEEKIRNECFKLKKDNKLWKDTIKH 395


>01_06_1586 - 38465662-38466267,38467986-38468079,38468169-38468455
          Length = 328

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -1

Query: 246 DVAFRLIVFIIFWGNINLHWFSCVHFEHYWRVLGLF**KYAKFT 115
           D  +R I+ +I W  I + W      +HY+  + L   +Y   T
Sbjct: 91  DWEYRCILIVIHWEYIGIDWIGFFRVDHYFVRIALSTDRYLLLT 134


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,676,812
Number of Sequences: 37544
Number of extensions: 323966
Number of successful extensions: 640
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)