Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0821
         (597 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051972-1|AAK93396.1|  525|Drosophila melanogaster LD43563p pro...    90   6e-19
AE014296-3080|AAF49212.1|  525|Drosophila melanogaster CG3889-PA...    90   6e-19
AF129080-1|AAD28605.1|  525|Drosophila melanogaster COP9 signalo...    88   2e-18
BT022388-1|AAY54804.1|  364|Drosophila melanogaster IP11532p pro...    60   3e-09
AE014134-2521|AAF53409.1|  364|Drosophila melanogaster CG4697-PA...    60   3e-09
AY069486-1|AAL39631.1|  355|Drosophila melanogaster LD21768p pro...    28   8.4  
AE013599-1382|AAM71025.2|  357|Drosophila melanogaster CG8889-PB...    28   8.4  
AE013599-1381|AAF58594.2|  355|Drosophila melanogaster CG8889-PA...    28   8.4  

>AY051972-1|AAK93396.1|  525|Drosophila melanogaster LD43563p
           protein.
          Length = 525

 Score = 89.8 bits (213), Expect(2) = 6e-19
 Identities = 39/61 (63%), Positives = 49/61 (80%)
 Frame = +3

Query: 255 PTLDLETYAASYTGFAKLYRLMFVADHCPSLRLEALKMAISYVMTTYNVNLYHTLHKKLS 434
           P++DLE YA  Y G  +L+RL++VAD CP L +EALKMAI+YV TTYNVNLY  LHK+LS
Sbjct: 41  PSIDLEVYANQYAGIVRLHRLIYVADVCPVLAVEALKMAITYVQTTYNVNLYQVLHKRLS 100

Query: 435 E 437
           +
Sbjct: 101 D 101



 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 24/37 (64%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
 Frame = +1

Query: 154 PPIMFEMNTAEPMQVDIPP--EDNENNETECYVVENP 258
           PP+M   N  EPMQVDI P  EDNENNE +  VVENP
Sbjct: 7   PPLM--QNAVEPMQVDIAPPNEDNENNEEQQIVVENP 41



 Score = 22.6 bits (46), Expect(2) = 6e-19
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +3

Query: 432 SEAVASA-GLPDIAGSQDIPVLDTIWVNQKQKKLP*NWEKL 551
           ++ VA A G    A  +D    D  WV+ K KK     EKL
Sbjct: 137 AQPVAQAQGQAQPAVEKDAFAYDAAWVDTKMKKAALKLEKL 177


>AE014296-3080|AAF49212.1|  525|Drosophila melanogaster CG3889-PA
           protein.
          Length = 525

 Score = 89.8 bits (213), Expect(2) = 6e-19
 Identities = 39/61 (63%), Positives = 49/61 (80%)
 Frame = +3

Query: 255 PTLDLETYAASYTGFAKLYRLMFVADHCPSLRLEALKMAISYVMTTYNVNLYHTLHKKLS 434
           P++DLE YA  Y G  +L+RL++VAD CP L +EALKMAI+YV TTYNVNLY  LHK+LS
Sbjct: 41  PSIDLEVYANQYAGIVRLHRLIYVADVCPVLAVEALKMAITYVQTTYNVNLYQVLHKRLS 100

Query: 435 E 437
           +
Sbjct: 101 D 101



 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 24/37 (64%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
 Frame = +1

Query: 154 PPIMFEMNTAEPMQVDIPP--EDNENNETECYVVENP 258
           PP+M   N  EPMQVDI P  EDNENNE +  VVENP
Sbjct: 7   PPLM--QNAVEPMQVDIAPPNEDNENNEEQQIVVENP 41



 Score = 22.6 bits (46), Expect(2) = 6e-19
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +3

Query: 432 SEAVASA-GLPDIAGSQDIPVLDTIWVNQKQKKLP*NWEKL 551
           ++ VA A G    A  +D    D  WV+ K KK     EKL
Sbjct: 137 AQPVAQAQGQAQPAVEKDAFAYDAAWVDTKMKKAALKLEKL 177


>AF129080-1|AAD28605.1|  525|Drosophila melanogaster COP9
           signalosome subunit 1 CSN1 protein.
          Length = 525

 Score = 88.2 bits (209), Expect(2) = 2e-18
 Identities = 38/61 (62%), Positives = 49/61 (80%)
 Frame = +3

Query: 255 PTLDLETYAASYTGFAKLYRLMFVADHCPSLRLEALKMAISYVMTTYNVNLYHTLHKKLS 434
           P++DLE +A  Y G  +L+RL++VAD CP L +EALKMAI+YV TTYNVNLY  LHK+LS
Sbjct: 41  PSIDLEVFANQYAGIVRLHRLIYVADVCPVLAVEALKMAITYVQTTYNVNLYQVLHKRLS 100

Query: 435 E 437
           +
Sbjct: 101 D 101



 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 24/37 (64%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
 Frame = +1

Query: 154 PPIMFEMNTAEPMQVDIPP--EDNENNETECYVVENP 258
           PP+M   N  EPMQVDI P  EDNENNE +  VVENP
Sbjct: 7   PPLM--QNAVEPMQVDIAPPNEDNENNEEQQIVVENP 41



 Score = 22.6 bits (46), Expect(2) = 2e-18
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +3

Query: 432 SEAVASA-GLPDIAGSQDIPVLDTIWVNQKQKKLP*NWEKL 551
           ++ VA A G    A  +D    D  WV+ K KK     EKL
Sbjct: 137 AQPVAQAQGQAQPAVEKDAFAYDAAWVDTKMKKAALKLEKL 177


>BT022388-1|AAY54804.1|  364|Drosophila melanogaster IP11532p
           protein.
          Length = 364

 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 28/57 (49%), Positives = 38/57 (66%)
 Frame = +3

Query: 261 LDLETYAASYTGFAKLYRLMFVADHCPSLRLEALKMAISYVMTTYNVNLYHTLHKKL 431
           L L +YA  YT   +L RL F+A  CP L + AL++A+++V TTYNV LY  L+K L
Sbjct: 9   LHLPSYADRYTDIPRLIRLKFIAQVCPELSVLALELALNHVKTTYNVKLYDELYKTL 65


>AE014134-2521|AAF53409.1|  364|Drosophila melanogaster CG4697-PA
           protein.
          Length = 364

 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 28/57 (49%), Positives = 38/57 (66%)
 Frame = +3

Query: 261 LDLETYAASYTGFAKLYRLMFVADHCPSLRLEALKMAISYVMTTYNVNLYHTLHKKL 431
           L L +YA  YT   +L RL F+A  CP L + AL++A+++V TTYNV LY  L+K L
Sbjct: 9   LHLPSYADRYTDIPRLIRLKFIAQVCPELSVLALELALNHVKTTYNVKLYDELYKTL 65


>AY069486-1|AAL39631.1|  355|Drosophila melanogaster LD21768p
          protein.
          Length = 355

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/21 (57%), Positives = 17/21 (80%), Gaps = 2/21 (9%)
 Frame = -2

Query: 74 TTLLVFFNKYLYHYV--SSWQ 18
          T LLVFFN+++ +Y+  SSWQ
Sbjct: 19 TLLLVFFNEFIVYYMAQSSWQ 39


>AE013599-1382|AAM71025.2|  357|Drosophila melanogaster CG8889-PB,
          isoform B protein.
          Length = 357

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/21 (57%), Positives = 17/21 (80%), Gaps = 2/21 (9%)
 Frame = -2

Query: 74 TTLLVFFNKYLYHYV--SSWQ 18
          T LLVFFN+++ +Y+  SSWQ
Sbjct: 21 TLLLVFFNEFIVYYMAQSSWQ 41


>AE013599-1381|AAF58594.2|  355|Drosophila melanogaster CG8889-PA,
          isoform A protein.
          Length = 355

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/21 (57%), Positives = 17/21 (80%), Gaps = 2/21 (9%)
 Frame = -2

Query: 74 TTLLVFFNKYLYHYV--SSWQ 18
          T LLVFFN+++ +Y+  SSWQ
Sbjct: 19 TLLLVFFNEFIVYYMAQSSWQ 39


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,501,488
Number of Sequences: 53049
Number of extensions: 576703
Number of successful extensions: 1322
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1319
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2420893683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)