Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0821
         (597 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61140.1 68416.m06842 COP9 signalosome complex subunit 1 / CS...    48   4e-06
At3g15910.1 68416.m02012 hypothetical protein                          27   9.5  

>At3g61140.1 68416.m06842 COP9 signalosome complex subunit 1 / CSN
           complex subunit 1 (CSN1) / COP11 protein (COP11) / FUSCA
           protein (FUS6) FUSCA6, COP11, CSN1; identical to FUS6
           GI:432446, SP:P45432 from [Arabidopsis thaliana];
           contains Pfam profile PF01399: PCI domain; identical to
           cDNA CSN complex subunit 1 (CSN1) GI:18056652
          Length = 441

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
 Frame = +3

Query: 261 LDLETYAASYTGFAKLYRLMFVADHC---PSLRLEALKMAISYVMTTYNVNLYHTLHKKL 431
           LD+E YAA Y G  K+ RL+F+A+HC    +L+ +AL+MA   +    N  L+  +  K+
Sbjct: 34  LDIEAYAALYKGRTKIMRLLFIANHCGGNHALQFDALRMAYDEIKKGENTQLFREVVNKI 93

Query: 432 SEAVASAGLPDIA 470
              +      D+A
Sbjct: 94  GNRLGEKYGMDLA 106


>At3g15910.1 68416.m02012 hypothetical protein
          Length = 307

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = +1

Query: 169 EMNTAEPMQVDIPPEDNENNETECYVVENPPW 264
           ++    P Q+ +   D++  + + Y +E+PPW
Sbjct: 33  KLTATTPSQLKVYVVDSKRGQRKFYCIEHPPW 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,123,628
Number of Sequences: 28952
Number of extensions: 281714
Number of successful extensions: 634
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)