Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0820
         (586 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8WRC2 Cluster: Tlr 7Rp protein; n=4; Tetrahymena therm...    36   0.93 
UniRef50_UPI0000499F09 Cluster: protein kinase; n=1; Entamoeba h...    34   2.2  
UniRef50_Q8I4R6 Cluster: Putative uncharacterized protein; n=1; ...    33   3.8  
UniRef50_Q0W0D7 Cluster: Putative Na(+)/H(+) antiporter; n=1; un...    33   6.6  

>UniRef50_Q8WRC2 Cluster: Tlr 7Rp protein; n=4; Tetrahymena
           thermophila|Rep: Tlr 7Rp protein - Tetrahymena
           thermophila
          Length = 203

 Score = 35.5 bits (78), Expect = 0.93
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +3

Query: 213 KTIFFKYVGKNLVYHDVFV*NFHFIINAVLFYCLANI--YIVSDVQISIFRYATRIRIKE 386
           K IFF  VGK  +    F  N+    N VLF+ L  +  + V D  I  F+Y+  +++K+
Sbjct: 95  KEIFFSIVGKKEIKESFFKRNYFINQNVVLFFVLVQLKRFDVLDKIIERFKYSESLKLKK 154


>UniRef50_UPI0000499F09 Cluster: protein kinase; n=1; Entamoeba
           histolytica HM-1:IMSS|Rep: protein kinase - Entamoeba
           histolytica HM-1:IMSS
          Length = 576

 Score = 34.3 bits (75), Expect = 2.2
 Identities = 26/94 (27%), Positives = 41/94 (43%)
 Frame = -3

Query: 299 DCINNKMKVLDKNIMINQILTYIFKKDCFNYTDNPTIDLPCTYSYLKSSQFNLFSSHQLT 120
           D   NK+ +++K +  ++     F      +  N TID P  Y  +   QF    +HQ +
Sbjct: 461 DAFENKV-IINKKLTNSEYYNVFFTLLQAGHVANITIDNPFEYGSITPKQFIRVFNHQFS 519

Query: 119 SLSCLFIPETSRDVP*QPGLTFNIYMMAQTLNNV 18
             S   IP+ S DVP        IY +  + N+V
Sbjct: 520 KPS---IPKVSTDVP--RSFVAQIYSVPDSFNSV 548


>UniRef50_Q8I4R6 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 655

 Score = 33.5 bits (73), Expect = 3.8
 Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
 Frame = -3

Query: 377 TYTRGISKNRNLYVTDNINICQAIK*DCINNKM------KVLDKNIMINQILTYIFKKDC 216
           TY +  S N+N+ VT+NIN  ++I  D IN  +      K+  + IMINQI  +  KK  
Sbjct: 578 TYQQNDSTNKNIKVTNNINDEKSI--DEINKSLQHNIYNKLNKRKIMINQI-NHEIKKKN 634

Query: 215 FNYTDNPTIDLP 180
            NY +  T   P
Sbjct: 635 NNYVNTSTNKKP 646


>UniRef50_Q0W0D7 Cluster: Putative Na(+)/H(+) antiporter; n=1;
           uncultured methanogenic archaeon RC-I|Rep: Putative
           Na(+)/H(+) antiporter - Uncultured methanogenic archaeon
           RC-I
          Length = 424

 Score = 32.7 bits (71), Expect = 6.6
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = +3

Query: 189 YSRVVCVVKTIFFKYVGKNLVYHDVFV*NFHFIINAVLFY 308
           +S VV ++KT FF Y+G +++  +V +     I+  ++FY
Sbjct: 281 FSEVVFLLKTFFFVYIGLSIIVSNVALMVMGLILTLIIFY 320


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 509,573,919
Number of Sequences: 1657284
Number of extensions: 9280382
Number of successful extensions: 19362
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19352
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 40820699206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)