Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0820
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    27   1.5  
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    27   1.5  
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    26   3.5  
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch...    25   6.2  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    25   8.1  

>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 251 NQILTYIFKKDCFNYTDNPTIDLPCTYS 168
           N+ + ++F+KD   YT+  T+ L C +S
Sbjct: 450 NKSMDFLFEKDWEKYTEEGTLKLFCAFS 477


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/59 (28%), Positives = 32/59 (54%)
 Frame = -3

Query: 284 KMKVLDKNIMINQILTYIFKKDCFNYTDNPTIDLPCTYSYLKSSQFNLFSSHQLTSLSC 108
           + ++L K  M +++L   FKK C + T +P      T S L  +++ + +  +L SL+C
Sbjct: 352 EFQILRKQPMQDKLLN--FKKLCKSKTVDPKNPDEFTESILNDTRYAVLTREELDSLAC 408


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = -3

Query: 299 DCINNKMKVL-DKNIMINQILTYIFKKDCFNYTDNPTIDLPCTYSYLKSSQFNLFSSHQL 123
           +C N   ++L ++ ++   IL    K D      +  I      S  KSS + +FS   L
Sbjct: 101 ECRNTLQELLVEEKLLFTSILVLANKSDVSGALSSEEISKILNISKYKSSHWRIFSVSAL 160

Query: 122 TSLS 111
           T L+
Sbjct: 161 TGLN 164


>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 216

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = -3

Query: 395 GFALFDTYTRGISKNRNLYVTDNINICQAIK*DCINNKMKVLDKNIMINQILTYIFKKDC 216
           G  +FD  +R   KN   +  D + +C+ I      NK+ V ++ +    I T+  KK+ 
Sbjct: 85  GIIMFDVTSRITYKNVPHWWRDLVRVCENIPIVLCGNKVDVKERKVKAKAI-TFHRKKNL 143

Query: 215 FNY 207
             Y
Sbjct: 144 QYY 146


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 24  IKCLGHHIYIKGKSRLLRDVPGRL 95
           + C GH +  K + R  RD+P R+
Sbjct: 379 MNCPGHCVMFKSRDRSYRDLPWRV 402


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,170,387
Number of Sequences: 5004
Number of extensions: 41241
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)