Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0820
         (586 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0001 + 12219741-12219927,12219976-12220955                       30   1.2  
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342...    29   2.7  
09_06_0082 + 20749425-20749589,20750137-20750238,20750320-207503...    28   6.3  
04_03_0989 - 21475147-21475361,21477029-21477074,21477364-21479292     28   6.3  

>07_03_0001 + 12219741-12219927,12219976-12220955
          Length = 388

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = -3

Query: 365 GISKNRNLYVTDNINICQAIK*DCINNKMKVLDKNIMINQILTYIFKKDCFNY 207
           G S NR +Y+   + IC  ++     +K   L++N++ NQI++ +    CF++
Sbjct: 176 GESDNRGIYLVHRVYICSDLEPPIHVDKTCKLERNVIANQIVSSL---PCFDW 225


>07_03_1479 - 26832976-26833095,26833737-26833943,26834104-26834252,
            26834330-26834732,26834840-26835118,26835285-26835716,
            26836362-26836838,26837171-26837212,26837285-26837545,
            26837637-26838938,26839146-26839575,26839643-26840046,
            26840360-26840716,26840842-26841102,26841494-26842141,
            26842231-26842452,26842547-26842768,26842860-26843009,
            26843739-26844111,26844467-26844689,26845167-26845425,
            26845585-26845920,26846013-26846999,26848395-26849624,
            26849706-26849768,26849858-26849910,26849998-26850079,
            26850520-26850588,26851070-26851129,26851205-26851267,
            26851993-26852101,26852742-26852827,26853120-26853847,
            26854613-26854676
          Length = 3716

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -3

Query: 380  DTYTRGISKNRNLYVTDNINICQAIK*DCINNKMKVLDKNIMINQILTYIF 228
            D   + + K   L++ +NIN    I   C NNKM  LD    +  +L  +F
Sbjct: 2073 DVMNKVLEKQPRLFIRNNINHISQILEPCFNNKM--LDAGKSLCSLLKMVF 2121


>09_06_0082 +
           20749425-20749589,20750137-20750238,20750320-20750384,
           20750471-20750588,20750937-20751012,20751304-20751365,
           20751457-20751588,20751686-20751739,20751969-20752034,
           20752115-20752189,20752271-20752321
          Length = 321

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -3

Query: 299 DCINNKMKVLDKNIMINQILTYIFKKDCFNYTDNPTIDLPCTYSY 165
           D   N+MK L +N++++ +   +  +  F  TD P   L  TYSY
Sbjct: 144 DEFENRMKNLKRNMVLSNLGRTLLLRQVFFLTDEP---LTITYSY 185


>04_03_0989 - 21475147-21475361,21477029-21477074,21477364-21479292
          Length = 729

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 258 HDKPDSYLHI*KRLF*LHRQPYYRPTLYL 172
           HD+P  YLH  K ++ LHR  + +P +YL
Sbjct: 676 HDEP-YYLHA-KHMYNLHRMKHQKPKVYL 702


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,856,130
Number of Sequences: 37544
Number of extensions: 222582
Number of successful extensions: 372
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)