Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0820
         (586 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_785| Best HMM Match : hATC (HMM E-Value=0.13)                       29   2.1  
SB_47422| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_40338| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)                   28   4.9  
SB_50017| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_7843| Best HMM Match : DUF740 (HMM E-Value=0.5)                     27   8.5  

>SB_785| Best HMM Match : hATC (HMM E-Value=0.13)
          Length = 205

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 43  IYILKVSPGCYGTSRDVSGINKHEREVNWWDENK 144
           + +    PGC     DV  IN  ER+V WW ++K
Sbjct: 116 VQLYNTVPGCEVYVSDVL-INTEERKVKWWHDHK 148


>SB_47422| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 40  IIYILKVS-PGCYGTSRDVSGINKHEREVNWWDENK 144
           IIY LK   P     + DV  IN  ER+V WW ++K
Sbjct: 169 IIYGLKAELPAYLAATADVV-INTEERKVKWWHDHK 203


>SB_40338| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +3

Query: 249 VYHDVFV*NFHFIINAVLFYCLANIYIVSDVQISI---FRYATRIRI 380
           VY D+F  N+H ++     +C   I I + V ISI    RY+TR  +
Sbjct: 51  VYTDIFKENWHCVVYHFPLFCFPFITITNLVVISIELYRRYSTRFEL 97


>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
          Length = 3616

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 64   PGCYGTSRDVSGINKHEREVNWWDENK 144
            P     + DV  INK ER+V WW ++K
Sbjct: 3534 PAYLAATADVV-INKEERKVKWWHDHK 3559


>SB_50017| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -3

Query: 395 GFALFDTYTRGISKNRNLYVTDNIN 321
           G +LF+  +R I+ +R+L VTDN N
Sbjct: 376 GLSLFEGQSRAITASRHLKVTDNDN 400


>SB_7843| Best HMM Match : DUF740 (HMM E-Value=0.5)
          Length = 1362

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 244 IWFIMMFLSRTFILLLMQSYFIAWQIFILSVTYRFL 351
           +W   M  SR   L+L  SYF  W +F+ +  + FL
Sbjct: 245 LWRTSMITSRVVALVLFASYFQHW-MFVAAAAHWFL 279


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,592,052
Number of Sequences: 59808
Number of extensions: 283054
Number of successful extensions: 519
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)