Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0820
         (586 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47067-3|CAA87330.2|  446|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AF067611-1|AAC19182.1|  603|Caenorhabditis elegans Hypothetical ...    29   3.2  
U50199-6|AAA91266.1|  470|Caenorhabditis elegans Vacuolar h atpa...    28   4.2  
AL023816-2|CAA19431.1|  355|Caenorhabditis elegans Hypothetical ...    28   5.6  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    27   7.4  
Z66497-9|CAA91286.1|  457|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z47067-3|CAA87330.2|  446|Caenorhabditis elegans Hypothetical
           protein C43C3.3 protein.
          Length = 446

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = -3

Query: 227 KKDCFNYTD---NPTIDLPCTYSYLKSSQFN 144
           KKD F+      NPT+ +P TYS+ + S +N
Sbjct: 408 KKDSFDMMSAFSNPTVSMPVTYSHYQRSAYN 438


>AF067611-1|AAC19182.1|  603|Caenorhabditis elegans Hypothetical
           protein C45G7.4 protein.
          Length = 603

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/65 (23%), Positives = 32/65 (49%)
 Frame = -3

Query: 275 VLDKNIMINQILTYIFKKDCFNYTDNPTIDLPCTYSYLKSSQFNLFSSHQLTSLSCLFIP 96
           +LD  ++ + ++T     + FN+ + P   LPC +++ +S  F+L    +   L  +  P
Sbjct: 11  ILDSLLIDDSLITCEVCFEVFNHENRPPKLLPCGHNFCESCIFSLCLHQEYYLLDSIKCP 70

Query: 95  ETSRD 81
              R+
Sbjct: 71  TCRRE 75


>U50199-6|AAA91266.1|  470|Caenorhabditis elegans Vacuolar h atpase
           protein 15 protein.
          Length = 470

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -3

Query: 263 NIMINQILTYIFKKDCFNYTDNPTIDLPCTYSYLKSSQFNLFSSHQL-TSLSCL 105
           N ++NQ+ + I K  CF  T     DL   +S+LK    N  ++  + T+  CL
Sbjct: 139 NFIVNQMSSIIAKLACFGTTRMEGQDLQYYFSFLKEQLKNSTTNDYMNTTARCL 192


>AL023816-2|CAA19431.1|  355|Caenorhabditis elegans Hypothetical
           protein T05G11.3 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 264 FV*NFHFIINAVLFYCLANIYIVSD 338
           F+ NF+  I+ +L YCL N++ +S+
Sbjct: 288 FIINFNSAIHFLLCYCLHNVFTISE 312


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +1

Query: 253  IMMFLSRTFILLLMQSYFIAWQIFILSVTY 342
            I+ F++++ ++ L + YFI  QI++ S  Y
Sbjct: 2223 IISFITKSSVIFLEECYFIVSQIYLFSKLY 2252


>Z66497-9|CAA91286.1|  457|Caenorhabditis elegans Hypothetical
           protein K08F8.4 protein.
          Length = 457

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -3

Query: 230 FKKDCFNYTDNPTIDLPCTYSYLKSSQFNLFSSHQ 126
           F KDC  YT  P   L  +  +L    F +F S Q
Sbjct: 233 FLKDCTGYTIRPVAGLLSSRDFLAGLAFRVFHSTQ 267


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,725,110
Number of Sequences: 27780
Number of extensions: 222568
Number of successful extensions: 499
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)