Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0819
         (636 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   3.7  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    22   4.9  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   8.6  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +3

Query: 507 FYCXSRGTIXLGAGPKYCFAH*XXHXLFXCXGAXFXRPFLIC 632
           FYC S  T  +      C  +   H LF C    F   FL+C
Sbjct: 59  FYCVSI-TFNVHLLFLLCSGYFTVHLLFYCPFIIFTVHFLLC 99


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 226 MLSIETRFPTLCRVRCKHQTPHLPVPTEKDVLG*LC 119
           +L ++TRF  L +   K    +    T+  VLG +C
Sbjct: 188 VLMLQTRFVILNKQLTKITVKNFATKTQSAVLGKIC 223


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 417 AGGLKHSSHLNHV 379
           A G  HS HL+H+
Sbjct: 102 ANGYNHSPHLSHM 114


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,906
Number of Sequences: 336
Number of extensions: 2454
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)