Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0819
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   1.7  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    27   2.3  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   6.9  
SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom...    25   9.1  

>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 479 CPSRNSSIDFLLPIQGHHLXWGRXKVLFC 565
           CPS +   DFLL    H L W R   + C
Sbjct: 143 CPSEDIKNDFLLDSLKHALHWDRHAKVVC 171


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = +1

Query: 94  TEFDSLESHITSQEHLF---QLVQVDVEFGAYNGLYRVLENAFQCLTCNEVYTPVNTMLK 264
           + FD+ + H+ +   L+   +   VD E   ++ L   +   F CLTCN  +  +  +  
Sbjct: 218 SSFDTCKKHMKASHSLYIPEREYLVD-EPSLFDYLAEKISIGFTCLTCNREFKSLEAVRA 276

Query: 265 QVQQR 279
            +QQ+
Sbjct: 277 HMQQK 281


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1157

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = -1

Query: 372  LYSYVCR*LVTVRLQLSLICHKSF 301
            L++Y+C+ L ++ L+  L+ HK+F
Sbjct: 957  LHAYLCQLLHSINLRSGLVKHKAF 980


>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 304

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 255 NVEASATTHFLESKHKRIYDKLAKAANE--QLQVNDKR 362
           ++EA    HF   + + IYD+  + AN+  +LQ   KR
Sbjct: 32  DIEARNRNHFYGFRAEPIYDQTERLANQVAELQEQQKR 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,079,008
Number of Sequences: 5004
Number of extensions: 38569
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)