Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0819
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0784 - 11154395-11154888,11155284-11155360,11155447-111554...    30   1.3  
01_06_0358 - 28677781-28677901,28678327-28678430,28678542-286786...    29   3.1  
06_03_0765 + 24421982-24422120,24422287-24422367,24422722-244229...    28   5.4  
03_05_0432 - 24231984-24233048,24233391-24235160,24235261-242365...    28   7.1  
05_01_0111 - 752045-752641                                             27   9.4  

>03_02_0784 -
           11154395-11154888,11155284-11155360,11155447-11155497,
           11155599-11155672,11156127-11156215,11156533-11156618,
           11157570-11157669,11158540-11158622,11158776-11159194
          Length = 490

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/50 (26%), Positives = 30/50 (60%)
 Frame = +3

Query: 264 ASATTHFLESKHKRIYDKLAKAANEQLQVNDKRTNKGXSRGLNAKNALSR 413
           A+ATT+F +  + +  +++ K + ++L  + +R + G SRG +    ++R
Sbjct: 252 ANATTNFPKESYVKEIEEMQKMSKQELVASLRRKSSGFSRGASIYRGVTR 301


>01_06_0358 - 28677781-28677901,28678327-28678430,28678542-28678625,
            28679221-28679265,28679523-28679594,28679721-28679759,
            28679966-28680061,28680492-28680566,28681717-28681764,
            28681888-28681971,28682141-28682341,28682394-28682561,
            28683232-28683372,28683470-28683517,28683845-28684087,
            28684184-28684297,28685134-28685163,28685361-28685951,
            28686033-28686620,28686744-28686863,28687764-28687938,
            28688397-28688562,28688653-28688755,28689227-28689319,
            28690759-28690918,28691754-28691872
          Length = 1275

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 21/83 (25%), Positives = 37/83 (44%)
 Frame = -1

Query: 390  LNHVIXLYSYVCR*LVTVRLQLSLICHKSFYV*TLRNALLHLLQHCIYWCINFVAC*ALK 211
            L H+  +Y    + +  V L  S + +  +++ T   +L   +  CI+W I  +    L 
Sbjct: 967  LQHLFNVYGRSPKVVKQVLLSTSKVLNFDYWITTTVCSLRRKIMQCIHWHIPNLILQTLT 1026

Query: 210  RVFQHSVESVVSTKLHIYLYQLK 142
                 S E V + K H+Y  +LK
Sbjct: 1027 EDSTPSAELVAAVK-HLYKTKLK 1048


>06_03_0765 +
           24421982-24422120,24422287-24422367,24422722-24422962,
           24423078-24423171,24423513-24423729,24423818-24423909,
           24424303-24424638
          Length = 399

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 448 DDNRPTGIXMLSIEKFIX*FFIAXPGAPSXLGPXQSIVLP 567
           DD+    +  L +  +    F+A PG  + +GP  + VLP
Sbjct: 125 DDDEAASLRWLDVGLYTSRIFMAVPGCSTMVGPMNTEVLP 164


>03_05_0432 -
           24231984-24233048,24233391-24235160,24235261-24236582,
           24236668-24237013
          Length = 1500

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/57 (24%), Positives = 32/57 (56%)
 Frame = +3

Query: 255 NVEASATTHFLESKHKRIYDKLAKAANEQLQVNDKRTNKGXSRGLNAKNALSRQLVI 425
           N+E +   H L+ KH+ + +K A+   E+L ++ +  +    +   A+ +L +QL++
Sbjct: 229 NLELNKLKHMLKQKHEELNEKQAEL--EKLNISTEEEHLKCMQAEMAQLSLEKQLIL 283


>05_01_0111 - 752045-752641
          Length = 198

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 109 LESHITSQEHLFQLVQVDVEFGAYNGLYRVLENAFQCLTCNEVY 240
           + SH   ++ L   V V +   A  G  R  E AF C TCN V+
Sbjct: 18  MSSHGQQEQALALPVPVQLPLAAARG-DRAPERAFVCKTCNRVF 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,602,534
Number of Sequences: 37544
Number of extensions: 245174
Number of successful extensions: 536
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)