Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0819
         (636 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4149| Best HMM Match : VWA (HMM E-Value=0)                          30   1.8  
SB_5624| Best HMM Match : LEA_4 (HMM E-Value=0.62)                     29   2.4  
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   3.2  

>SB_4149| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1141

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = -3

Query: 202 PTLCRVRCKH----QTPHLPVPTEKDVLG*LCDSPENQ 101
           PT+    C+H    ++PHLP PT   V   +C  P N+
Sbjct: 225 PTVSNHICRHPPNIKSPHLPTPTNPTVCHQICRHPPNK 262


>SB_5624| Best HMM Match : LEA_4 (HMM E-Value=0.62)
          Length = 372

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +3

Query: 177 LQRTLQSVGKRVSMLNMQRSLYTSKYNVEASATTHFLESKHKRIYDKLAKAANEQLQVND 356
           + +TL  + K     N  R L   ++ +  +    FL+ K   + D   +   E L VN+
Sbjct: 274 MAKTLSEITKIDPQFNKDRFLQECEFEIIPAVLEGFLQGKLDILKDWCHEPLGEALLVNN 333

Query: 357 KRTNK 371
            RTN+
Sbjct: 334 ARTNR 338


>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -3

Query: 358  LSLTCNCSFAAFANLS*ILLCLDSKKCVVALASTLYLLVYKLRCM--LSIETRFPTLC 191
            LSL   C  A F +LS + LC     C+ AL+ +L  L     C+  LS+  R+  LC
Sbjct: 1831 LSLCAVCILALFVSLSYLCLC---AICIFALSVSLRYLYLCAICIFALSVSLRYLYLC 1885



 Score = 28.3 bits (60), Expect = 5.5
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = -3

Query: 370  LFVRLSLTCNCSFAAFA---NLS*ILLCLDSKKCVVALASTLYLLVYKLRCM--LSIETR 206
            LFV LS  C C+   FA   +L  + LC     C+ AL+ +L  L     C+  L +  R
Sbjct: 1841 LFVSLSYLCLCAICIFALSVSLRYLYLC---AICIFALSVSLRYLYLCAFCIFALYLSLR 1897

Query: 205  FPTLCRV 185
            F  LC +
Sbjct: 1898 FLYLCAI 1904


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,930,197
Number of Sequences: 59808
Number of extensions: 297708
Number of successful extensions: 624
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)