Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0819
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66561-4|CAA91457.2|  185|Caenorhabditis elegans Hypothetical pr...    31   0.91 
AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacti...    30   1.2  
Z82280-8|CAB05269.3|  280|Caenorhabditis elegans Hypothetical pr...    28   6.4  

>Z66561-4|CAA91457.2|  185|Caenorhabditis elegans Hypothetical
           protein F08G12.5 protein.
          Length = 185

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 19/49 (38%), Positives = 28/49 (57%)
 Frame = +3

Query: 204 KRVSMLNMQRSLYTSKYNVEASATTHFLESKHKRIYDKLAKAANEQLQV 350
           KRVSM  + ++ YT K  +++       E K +R YD    A+NEQL+V
Sbjct: 92  KRVSMSKVIQN-YTLKNVLDSINELSREEEKSRRAYDNTLDASNEQLRV 139


>AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacting
           protein protein 6 protein.
          Length = 1106

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +3

Query: 192 QSVGKRVSMLNMQRS---LYTSKYNVEASATTHFLESKHKRIYDKLAKAANEQLQVNDKR 362
           Q +GK    +  +R     Y  +Y  +    TH L+ K K + DK+A+ A     +   R
Sbjct: 555 QKLGKDCDSIKYERDSWKAYAERYKKDVIKLTHTLKEKDKELLDKIAEIAATPKSITTPR 614

Query: 363 T 365
           +
Sbjct: 615 S 615


>Z82280-8|CAB05269.3|  280|Caenorhabditis elegans Hypothetical
           protein R05A10.8 protein.
          Length = 280

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +1

Query: 133 EHLFQLVQVDVEFGAYNGLYRVLENAFQCLTCNEVY-TPVNTM-LKQVQQR 279
           +H  +L+++D+E G   GL  ++++ F C    EV+ TP+  + + Q+  R
Sbjct: 190 KHEVELLKIDIEEGELTGLEPLIKDFFVCQIFIEVHGTPLKHLDMLQIMAR 240


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,881,960
Number of Sequences: 27780
Number of extensions: 230358
Number of successful extensions: 557
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)