Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0819
         (636 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68320.1 68414.m07804 myb family transcription factor (MYB62)...    29   3.4  
At1g52370.1 68414.m05910 ribosomal protein L22 family  protein s...    28   6.0  
At4g08850.2 68417.m01455 leucine-rich repeat family protein / pr...    27   7.9  
At4g08850.1 68417.m01454 leucine-rich repeat family protein / pr...    27   7.9  

>At1g68320.1 68414.m07804 myb family transcription factor (MYB62)
           similar to myb-related transcription factor (cpm7)
           GI:1002799 from [Craterostigma plantagineum]; contains
           PFAM profile: myb DNA binding domain PF00249
          Length = 286

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 440 QMKMTTDRPESXCCPSRNSSIDFLLPIQGH 529
           +M+  +    + CCP  N++   LLP Q H
Sbjct: 150 KMEQNSSTTTTYCCPQNNNNNSLLLPSQSH 179


>At1g52370.1 68414.m05910 ribosomal protein L22 family  protein
           similar to GB:Z67753 from [Odontella sinensis]
          Length = 269

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +3

Query: 177 LQRTLQSVGKRVSMLNMQRSLYTSKYNVEASATTHFLESKHKRIY 311
           LQ  ++ VGKRV   ++  + Y+S  N+E+  +  +L+S  +  Y
Sbjct: 8   LQIVIRQVGKRVKDSHISTANYSSTRNLESPFSQGYLQSLLRSTY 52


>At4g08850.2 68417.m01455 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1009

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -3

Query: 424 MTSWRLKAFFAFKPRDXPLFVRLSLTCNCSFAAFANL 314
           +TS++ +     KPRD  + + +S+  +CSFA  A +
Sbjct: 12  LTSFKERMACKEKPRDLQVLLIISIVLSCSFAVSATV 48


>At4g08850.1 68417.m01454 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1045

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -3

Query: 424 MTSWRLKAFFAFKPRDXPLFVRLSLTCNCSFAAFANL 314
           +TS++ +     KPRD  + + +S+  +CSFA  A +
Sbjct: 12  LTSFKERMACKEKPRDLQVLLIISIVLSCSFAVSATV 48


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,032,327
Number of Sequences: 28952
Number of extensions: 202048
Number of successful extensions: 431
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)