Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0816
         (501 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5DKX5 Cluster: NADH-ubiquinone oxidoreductase chain 1;...    35   1.2  
UniRef50_Q22U91 Cluster: Putative uncharacterized protein; n=1; ...    33   4.8  

>UniRef50_Q5DKX5 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=3; Pseudococcidae|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Maconellicoccus hirsutus (hibiscus mealybug)
          Length = 306

 Score = 34.7 bits (76), Expect = 1.2
 Identities = 19/65 (29%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
 Frame = -2

Query: 302 FHMMWLEATFY*KISLRDELRICIEILYLHNFDLQMIIVLFFRKGTLTHYRL*QLFILV- 126
           F + +L+  F+  I+L + L I I  +Y++   + ++++  F +G +  YR+ +LFIL+ 
Sbjct: 223 FLIEYLDLIFFSLITLINFLNIFIMYMYMYIILILVLLLFLFFRGFIIRYRMDKLFILLW 282

Query: 125 RGIYP 111
           + I+P
Sbjct: 283 KVIFP 287


>UniRef50_Q22U91 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 593

 Score = 32.7 bits (71), Expect = 4.8
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +2

Query: 167 YLF*KTKQ*SFVNQSCVDIKFRYIFEVHREGKFFNKKLPL-TTSYERLVLAMYPVYFCRE 343
           YL    +    +N+SCVD+ F+YIF    +  +    LP  +  Y  LVL ++ V+F  +
Sbjct: 361 YLVASLEMKKLINESCVDLSFKYIFNYFSD--YSQSDLPRESLVYAALVLLIF-VFFSDQ 417

Query: 344 AVMR 355
            V++
Sbjct: 418 IVIQ 421


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 415,679,641
Number of Sequences: 1657284
Number of extensions: 7356975
Number of successful extensions: 12725
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12722
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29691847201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)