Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0816
         (501 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    21   5.5  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    21   5.5  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    21   5.5  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    21   5.5  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    21   5.5  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    21   5.5  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    21   5.5  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    21   5.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   5.5  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   5.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   5.5  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    21   7.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.5  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   9.5  

>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 23  EFSKEEN*DRRWRTRSETEMIM 88
           E SKE + DRR R RS+   I+
Sbjct: 61  ETSKERSRDRRERERSKEPKIV 82


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 23  EFSKEEN*DRRWRTRSETEMIM 88
           E SKE + DRR R RS+   I+
Sbjct: 61  ETSKERSRDRRERERSKEPKII 82


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 23  EFSKEEN*DRRWRTRSETEMIM 88
           E SKE + DRR R RS+   I+
Sbjct: 61  ETSKERSRDRRERERSKEPKII 82


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 23  EFSKEEN*DRRWRTRSETEMIM 88
           E SKE + DRR R RS+   I+
Sbjct: 61  ETSKERSRDRRERERSKEPKII 82


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 23  EFSKEEN*DRRWRTRSETEMIM 88
           E SKE + DRR R RS+   I+
Sbjct: 61  ETSKERSRDRRERERSKEPKII 82


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 23  EFSKEEN*DRRWRTRSETEMIM 88
           E SKE + DRR R RS+   I+
Sbjct: 61  ETSKERSRDRRERERSKEPKII 82


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 23  EFSKEEN*DRRWRTRSETEMIM 88
           E SKE + DRR R RS+   I+
Sbjct: 61  ETSKERSRDRRERERSKEPKII 82


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 23  EFSKEEN*DRRWRTRSETEMIM 88
           E SKE + DRR R RS+   I+
Sbjct: 61  ETSKERSRDRRERERSKEPKII 82


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 239 FEVHREGKFFNKKLPLTTSYERL 307
           FE   +GKFF+++L L    E+L
Sbjct: 416 FEHRYQGKFFDEELILGELSEKL 438


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 23  EFSKEEN*DRRWRTRSETEMIM 88
           E SKE + DRR R RS+   I+
Sbjct: 283 ETSKERSRDRRERERSKEPKII 304


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 239 FEVHREGKFFNKKLPLTTSYERL 307
           FE   +GKFF+++L L    E+L
Sbjct: 384 FEHRYQGKFFDEELILGELSEKL 406


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 23  EFSKEEN*DRRWRTRSETEMIM 88
           E SKE + DRR R RS    I+
Sbjct: 294 ETSKERSRDRRERGRSREHRII 315


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 365 SNRNALLLHGRNRQGTWPTP 306
           +  NA+LL GR+++ T   P
Sbjct: 366 TKENAMLLSGRSQKSTTGPP 385


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 5/17 (29%), Positives = 11/17 (64%)
 Frame = -2

Query: 338 GRNRQGTWPTPVFHMMW 288
           G+N +G W   +F+ ++
Sbjct: 18  GQNNKGWWKNAIFYQVY 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,244
Number of Sequences: 438
Number of extensions: 2477
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)