Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0814
         (605 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    23   2.6  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    23   2.6  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   3.5  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   4.6  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   8.1  

>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 350 FWSWRSYRGVCFSIKNNLEYF 412
           FWS++SY    F+    LE++
Sbjct: 125 FWSYQSYMSYIFANIMGLEFY 145


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 350 FWSWRSYRGVCFSIKNNLEYF 412
           FWS++SY    F+    LE++
Sbjct: 125 FWSYQSYMSYIFANIMGLEFY 145


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 538 VRFNIYSSKXRXGXFK 491
           + +NI SSK R G FK
Sbjct: 351 ILYNIISSKFRSGFFK 366


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 81  PNGILAQIGGKRQGPAEDHQNDL 149
           P     QIG +R  P   HQN++
Sbjct: 385 PESPYPQIGSERATPVGYHQNEV 407


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 125 C*RPPKRPSSAKTRVQTKLTRPRCSQGS 208
           C R   RPSS ++    ++ +P   QG+
Sbjct: 196 CTRYSDRPSSGRSPRTRRVKKPGAKQGA 223


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,713
Number of Sequences: 336
Number of extensions: 2355
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)