Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0814
         (605 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0442 + 3495333-3496484                                           28   5.0  
11_06_0373 - 22786217-22786426                                         28   6.6  
08_02_1047 - 23927822-23928112,23928736-23928981,23929119-239293...    27   8.7  
07_01_1149 + 10789733-10791209,10791326-10791588,10791745-107919...    27   8.7  
01_06_0362 + 28739969-28740232,28740336-28740452,28740560-287406...    27   8.7  

>12_01_0442 + 3495333-3496484
          Length = 383

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +2

Query: 71  VTRSKRYTGADRRKTARAC*RPPKRPSSAKTRVQTKLTRPRCSQGSV 211
           VTR  R   A     A A   PP +P+S KT+ + K  +P+  +  V
Sbjct: 203 VTRPPRTKQAPPTAPAPAPPPPPPQPASPKTKTKAKAKKPKRKRSCV 249


>11_06_0373 - 22786217-22786426
          Length = 69

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +2

Query: 305 CGVVLXXXXXXXXXVFWSWRSYRGVCFSIKNNLEY 409
           CG V+          FW+W ++RG    +  ++EY
Sbjct: 4   CGRVMADEDFVEERRFWAWENHRGFLVDVGASVEY 38


>08_02_1047 -
           23927822-23928112,23928736-23928981,23929119-23929395,
           23929522-23929799,23931147-23931572
          Length = 505

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +2

Query: 59  TSPAVTRSKRYTGADRRKTARAC*RPPKRPSSAKTRVQTKLTRP 190
           +SP   R+ R  G  R +  RA  RPP + S    R  T L +P
Sbjct: 13  SSPWPARAPRRGGLLRARAVRAAPRPPSKWSLGSWRSLTALQQP 56


>07_01_1149 +
           10789733-10791209,10791326-10791588,10791745-10791954,
           10792398-10792475,10792505-10792705,10792768-10792908,
           10794749-10795714,10797824-10797919,10798450-10798638,
           10798849-10798956
          Length = 1242

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 218 YLSRTLANISAESTLFGPSFLPKKVVLVVFSRPLPFSADLRQYTVW 81
           Y ++ LAN+  +S  F PS   KK++ VV ++ +P        T W
Sbjct: 514 YSTQPLANV--KSIKFKPSLASKKIITVVSAKDIPTGGRNIGSTFW 557


>01_06_0362 +
           28739969-28740232,28740336-28740452,28740560-28740660,
           28741251-28741322,28741433-28741514,28741607-28741687,
           28742548-28742589,28743009-28743047,28743278-28743343,
           28743444-28743590,28743638-28743652
          Length = 341

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -3

Query: 183 VNFVWTLVF--AEEGRFGGLQQALAVFRRSAPVYRLDRVTAG 64
           ++F+W   F   EEG+F       +V+  SAP ++LDR T G
Sbjct: 79  LDFLWDAFFRNGEEGKF-------SVYVHSAPGFQLDRTTTG 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,621,973
Number of Sequences: 37544
Number of extensions: 235768
Number of successful extensions: 571
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)