Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0814
         (605 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25593| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_44679| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35)                 29   3.9  
SB_16460| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_51825| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-08)                 28   6.7  

>SB_25593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 746

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 107 RKTARAC*RPPKRPSSAKTRVQTKLT 184
           R+ ARAC R PK PS++ T    K T
Sbjct: 541 RRDARACARAPKMPSASYTHQSRKAT 566


>SB_44679| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 213 KIXPKYSEPNNHQEAVIVQFSRVKDLSGQCC 305
           ++ P+Y+  NN   A+  Q+SR K  S QCC
Sbjct: 38  RVKPRYT--NNRTTAICGQYSRSKRKSYQCC 66


>SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35)
          Length = 521

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -1

Query: 239 RFRILRXYLSRTLANISAESTLFGPSFLPKKVVLVVFSRP 120
           RF+ +R  ++  L N++    + G  FLP+ ++L VF+ P
Sbjct: 216 RFQRMRTPMNYLLVNLAISDIVVGIFFLPRHLLLGVFTYP 255


>SB_16460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +3

Query: 195 VRKGP*KIXPKYSEPNNHQEAVIVQFSRVKD 287
           +++ P K  P+Y EPN +Q +V+V+ S +++
Sbjct: 253 IKQTPPKKIPRYVEPNANQRSVVVRVSLLEN 283


>SB_51825| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-08)
          Length = 364

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 248 MIIRFRILRXYLSRTLANISAESTLFGPSFLPKKV 144
           M+ R+RILR + +  + +++    LFG   LP  +
Sbjct: 30  MVYRYRILRTFTNGFVVSLALSDILFGAVLLPVNI 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,026,309
Number of Sequences: 59808
Number of extensions: 285605
Number of successful extensions: 782
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)