Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0814
         (605 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   3.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.1  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   7.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   9.4  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
 Frame = -3

Query: 219 VSFTDPCEHLGRVNFV--WTL 163
           ++F  PCEH G V+ +  W L
Sbjct: 109 ITFDIPCEHRGLVSIIDGWEL 129


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -3

Query: 183 VNFVWTLVFAEEGRFG 136
           +NF ++L  + +G+FG
Sbjct: 474 INFTYSLALSPDGQFG 489


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +3

Query: 240 NNHQEAVIVQFSRVKDLSGQCCVVLFC 320
           N   EA++++  R+  L    C + FC
Sbjct: 145 NRLDEAILIKNERICILKSITCALQFC 171


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 337 ILDYDLQNNTTQH*PERSFTRE 272
           I DYDL+N    + P R  +++
Sbjct: 11  ITDYDLENEFNINRPRRKLSKK 32


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 377 VCFSIKNNLEYFYATFDFF 433
           VC +I + +EY  +  D+F
Sbjct: 106 VCVAISSRMEYECSRIDYF 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,816
Number of Sequences: 438
Number of extensions: 2717
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)