Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0812
(581 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 29 0.37
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 29 0.65
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.0
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom... 27 2.6
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 3.5
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom... 26 3.5
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |... 26 4.6
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 25 6.1
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 25 6.1
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 8.1
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 29.5 bits (63), Expect = 0.37
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 137 TFKKQVCLGFVEKRDKDGVTQKVDNDYVLSGHYEIDI 247
+ +KQV + F + ++ V V NDYVLSG + + +
Sbjct: 243 SIEKQVAIHFQQSKEGYEVVHVVFNDYVLSGGWTVSL 279
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 28.7 bits (61), Expect = 0.65
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 11/122 (9%)
Frame = +2
Query: 71 GGEPIYRDGNYCGQTTTTSYGFTFKKQ--VCLG---FVEKRDKDGVTQKVDNDYVLSGHY 235
G PIY D +Y T +YG + + C G +V+ R+ +GV + + +G
Sbjct: 259 GANPIYLDDSYWS-TVKPTYGLALECEGDTCSGLPCYVDPRE-NGVQGCPEGSPIGAGGA 316
Query: 236 EIDIAG--KGTRQK*ICTPRTYQR----SIPTRNATSTRQRGNCTSPNSSSAGITSRKTV 397
+ G +GT K + + + S + ATS+ + TSP +SS+ + S +
Sbjct: 317 CFCVVGFQQGTTAKIVVVDYSEEMASSSSSASATATSSAESSIATSPITSSSNVVSSIST 376
Query: 398 SS 403
SS
Sbjct: 377 SS 378
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.1 bits (57), Expect = 2.0
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 281 TPRTYQRSIPTRNATSTRQRGNCTSPNSSSAGITSRKTVSS 403
TP TY S+PT +T N + ++SS+ +TS SS
Sbjct: 44 TPATYLSSVPTLLKRATTSY-NYNTSSASSSSLTSSSAASS 83
>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 26.6 bits (56), Expect = 2.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 74 GEPIYRDGNYCGQTTTTSYGFTFKK 148
GEP Y D NYC T +T T K+
Sbjct: 234 GEPGY-DANYCDNTVSTLQSLTMKQ 257
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 26.2 bits (55), Expect = 3.5
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 305 IPTRNA-TSTRQRGNCTSPNSSSAGITSRKTVSSRTGMLNFDK 430
IP NA S+R + T P+ SSA S + SS + N DK
Sbjct: 338 IPNENAHESSRSKKKHTGPSLSSASQPSAASSSSSSEPSNLDK 380
>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 370
Score = 26.2 bits (55), Expect = 3.5
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = +3
Query: 348 ARAPTVPRPALPAVKL 395
A+AP +P+P +PA+KL
Sbjct: 233 AKAPELPKPLIPAMKL 248
>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1032
Score = 25.8 bits (54), Expect = 4.6
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -2
Query: 238 LIMAAQNVIVVNFLRNTVLIAFLDETKAYLFLECESVTGGGCLTTI 101
L++ +N+ + + NTV + + ++ YL L + GG C T I
Sbjct: 573 LLLEKRNMHIQRYGPNTVKLYYAFDSGDYLCLVMDYFNGGDCETLI 618
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 25.4 bits (53), Expect = 6.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 293 YQRSIPTRNATSTRQRGNCTSPNSSSAGITS 385
YQ+ R +STRQ N SP+ SA +S
Sbjct: 38 YQKEAFYRGRSSTRQFNNTRSPSGRSASRSS 68
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 25.4 bits (53), Expect = 6.1
Identities = 13/51 (25%), Positives = 29/51 (56%)
Frame = +1
Query: 289 NLPTKYPDKERDVYQATRKLHEPQQFLGRHYQP*NCIQPNWNAEL*QGIQN 441
N+ T++P++ +D+ + T+ + ++F G+ N P NA+ Q ++N
Sbjct: 279 NVSTEFPEETKDLSEDTKPSKQARRFFGQKSIVSNRNMPTDNAKQ-QKVEN 328
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.0 bits (52), Expect = 8.1
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +2
Query: 302 SIPTRNATSTRQRGNCTSPNSSSAGITSRKTVSSRT 409
++PT A +T SP+SSS+ +++ T ++++
Sbjct: 141 AVPTTEARNTSITEPANSPSSSSSSASTKSTATTQS 176
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,304,149
Number of Sequences: 5004
Number of extensions: 47470
Number of successful extensions: 145
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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