Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0812
(581 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1188 + 24671022-24672482 31 0.89
03_06_0659 - 35345095-35345135,35345982-35347365 29 2.0
11_06_0577 - 25158833-25162864 29 2.7
04_03_0822 - 20054832-20055179,20056794-20056847,20057561-200576... 29 2.7
12_02_1067 - 25792295-25793167 28 6.2
03_04_0034 + 16679624-16679940,16679980-16680199,16680319-166806... 28 6.2
11_03_0128 - 10437407-10438049,10438097-10438272 27 8.2
10_03_0040 - 7307108-7307564,7307611-7307915 27 8.2
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811... 27 8.2
03_05_0354 + 23411485-23411802,23411886-23412176,23414610-234146... 27 8.2
01_06_0912 + 32933362-32933515,32933628-32933697,32933893-329340... 27 8.2
>07_03_1188 + 24671022-24672482
Length = 486
Score = 30.7 bits (66), Expect = 0.89
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -2
Query: 436 EFLVKVQHSSSAGYSFTAGNAGRGTVGARAVSSLPGRRRVPCRDTSLVSSGSAD 275
EF + H + Y + AGR T + LP + R TSLVSS SA+
Sbjct: 140 EFPSALGHDTLDAYLLSLARAGRATDAVKVFDELPPQLRTRQALTSLVSSLSAE 193
>03_06_0659 - 35345095-35345135,35345982-35347365
Length = 474
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -2
Query: 184 LIAFLDETKAYLFLECESVTGGGCLTTIVPVSIYRL-PAPRP 62
L+AFL+ T +YLF++ + TIVP+ L P+P P
Sbjct: 189 LLAFLERTDSYLFVDAYTYFTWSANHTIVPLHYALLEPSPSP 230
>11_06_0577 - 25158833-25162864
Length = 1343
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 305 IPTRNATSTRQRGNCTSPNSSSAGITS 385
IPT+NA S+ G+ T+P+S +A T+
Sbjct: 138 IPTKNAASSSGHGSQTAPSSDAAAATA 164
>04_03_0822 -
20054832-20055179,20056794-20056847,20057561-20057657,
20057752-20057780
Length = 175
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2
Query: 251 GKGTRQK*ICTPRTYQRSIPTRNATSTRQRGNCTSPNSSSAGITSRKTVSSRT 409
G G+ K +C P T+ S R S+ +SP +++A + ++ SSRT
Sbjct: 119 GHGSGPKCVCAPATHAGSFKCRLHRSSSHGHPSSSPTAAAAPAAAVQSSSSRT 171
>12_02_1067 - 25792295-25793167
Length = 290
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 314 LSGYFVGKFGECRFTFAAYLSRLC 243
L+ F ++G RFTFA YL RLC
Sbjct: 77 LAAAFAARYGVRRFTFAGYL-RLC 99
>03_04_0034 +
16679624-16679940,16679980-16680199,16680319-16680624,
16680703-16681044,16681066-16681257,16681533-16681684,
16681803-16681974,16682017-16682338,16682414-16682862
Length = 823
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 328 YQATRKLHEPQQFLGRHYQ 384
+QAT +H+ +QF+GRH Q
Sbjct: 226 FQATGLVHDREQFMGRHRQ 244
>11_03_0128 - 10437407-10438049,10438097-10438272
Length = 272
Score = 27.5 bits (58), Expect = 8.2
Identities = 30/92 (32%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Frame = +2
Query: 152 VCLGFVEKRDKDGVTQKVDNDYVLSGHYEIDIAG-----KGTRQK*ICTPRTYQRSIPTR 316
+ LGF+E R+ Q+VD H AG G R + PR RS T
Sbjct: 80 IWLGFLEGRESKKADQRVDAAGDEGPHQLCPAAGIHRPDDGHRARQRHLPR---RSRSTA 136
Query: 317 NATSTRQRGNC-TSPNSSSAGITSRKTVSSRT 409
+ +ST R C +PNS+S T + SS T
Sbjct: 137 STSSTTCRTCCRATPNSTSPCKTGSRCSSSTT 168
>10_03_0040 - 7307108-7307564,7307611-7307915
Length = 253
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -2
Query: 412 SSSAGYSFT--AGNAGRGTVGARAVSSLPGRRR 320
SS++G + T G+AGRG GA A PG+ R
Sbjct: 24 SSTSGQAATRRCGSAGRGGYGAGAARRRPGKAR 56
>04_04_0214 -
23674270-23676858,23677574-23680843,23680941-23681119,
23681200-23681559,23681645-23682086,23682199-23682332,
23682479-23682680
Length = 2391
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 149 QVCLGFVEKRDKDGVTQKVDNDYVLSGHYEIDIAGK 256
+VC G+VE+ D D + + VD D L+ H E + G+
Sbjct: 840 RVCCGYVEQDDTDTLIRIVDPD-SLTEHQEDGVEGE 874
>03_05_0354 +
23411485-23411802,23411886-23412176,23414610-23414675,
23415186-23415645,23415963-23416189,23416362-23416649,
23416955-23416966
Length = 553
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +3
Query: 36 PTTTTSWTFGRGAGSRYIETGTIVVRQPPPVTDSHSRNRYALVSS--RNAIRTVLR 197
P S FGR S E G R+ PP+ D + +R+ L + RN+ R++ R
Sbjct: 312 PHFVGSHGFGRAENSAGAEQGGRNGRRTPPIVDGDNGHRHHLEMTLHRNSCRSIPR 367
>01_06_0912 +
32933362-32933515,32933628-32933697,32933893-32934035,
32934127-32934637,32934693-32934729,32935254-32935350,
32936774-32937153
Length = 463
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +2
Query: 107 GQTTTTSYGFTFKKQVCLGFVEK---RDKDGVTQKVDNDYVLSG 229
GQ ++ +++K++ G++ + D D +T DN+YVL G
Sbjct: 62 GQDMADNFSWSYKRKYKAGYIWQDLMMDDDLITPISDNEYVLKG 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,319,508
Number of Sequences: 37544
Number of extensions: 330527
Number of successful extensions: 1151
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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