Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0812
(581 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57131| Best HMM Match : GCV_T (HMM E-Value=7e-25) 58 5e-09
SB_26779| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.30
SB_11863| Best HMM Match : zf-C2H2 (HMM E-Value=0) 31 0.52
SB_53663| Best HMM Match : Peptidase_M10 (HMM E-Value=0) 29 2.8
SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3) 29 2.8
SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_3143| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11) 28 4.8
SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_10490| Best HMM Match : Toxin_27 (HMM E-Value=6.4) 28 4.8
SB_48266| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_17294| Best HMM Match : Avirulence (HMM E-Value=1.8) 28 6.4
SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_10360| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_9053| Best HMM Match : TIG (HMM E-Value=0) 27 8.5
SB_3069| Best HMM Match : zf-C2H2 (HMM E-Value=1e-06) 27 8.5
SB_32061| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_16968| Best HMM Match : Laminin_EGF (HMM E-Value=0) 27 8.5
>SB_57131| Best HMM Match : GCV_T (HMM E-Value=7e-25)
Length = 537
Score = 58.0 bits (134), Expect = 5e-09
Identities = 25/63 (39%), Positives = 37/63 (58%)
Frame = +2
Query: 68 WGGEPIYRDGNYCGQTTTTSYGFTFKKQVCLGFVEKRDKDGVTQKVDNDYVLSGHYEIDI 247
WGGEPI R+G G T++ S+ FT VC+G+V V ++Y+ G +EID+
Sbjct: 479 WGGEPILRNGEIVGTTSSASFSFTLNAPVCMGYV-----SNAGHPVSDEYIRDGKFEIDV 533
Query: 248 AGK 256
AG+
Sbjct: 534 AGQ 536
>SB_26779| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 611
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/63 (33%), Positives = 35/63 (55%)
Frame = +2
Query: 68 WGGEPIYRDGNYCGQTTTTSYGFTFKKQVCLGFVEKRDKDGVTQKVDNDYVLSGHYEIDI 247
WGGE I +G+ G T++ Y F + VC VE KDG +++ D++ +++I
Sbjct: 539 WGGETIVHNGDVIGMVTSSVYSFAQGRPVCFALVE---KDG--EEITADFLQGKRLQMNI 593
Query: 248 AGK 256
AG+
Sbjct: 594 AGQ 596
>SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1268
Score = 32.3 bits (70), Expect = 0.30
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = +3
Query: 273 KSALPELTNEVSRQGTRRLPGNEETARAPTVPRPALPAVKLYPAEL 410
KS P + NE GT P N E++ APT P P+ P + P L
Sbjct: 559 KSEKPSIDNE----GTEETPQNTESSPAPTSPAPSGPEILKEPLNL 600
>SB_11863| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 921
Score = 31.5 bits (68), Expect = 0.52
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 281 TPRTYQRSIPTRN-ATSTRQRGNCTSPNSSSAGITSRKT 394
TPRT S+PTR+ ++STR R + T SSS S T
Sbjct: 810 TPRTRVSSLPTRDQSSSTRDRNSSTRDQSSSTRDQSSST 848
>SB_53663| Best HMM Match : Peptidase_M10 (HMM E-Value=0)
Length = 684
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 299 RSIPTRNATSTRQRGNCTSPNSSSAGITSRKTVSSRTGMLNFDKE 433
RS +RN T T + NCT P G + ++ M +FD++
Sbjct: 318 RSFGSRNHTGTAREPNCTDPFDGEGGTLAHAALAG--AMAHFDED 360
>SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3)
Length = 769
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 111 RQPPPVTDSHSRNRYALVSSRNAIRTV 191
R+ P TD H R RY V+ IRTV
Sbjct: 323 RRDEPPTDIHERRRYRKVTKTKTIRTV 349
>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1670
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 111 RQPPPVTDSHSRNRYALVSSRNAIRTV 191
R+ P TD H R RY V+ IRTV
Sbjct: 990 RRDEPPTDIHERRRYRKVTKTKTIRTV 1016
>SB_3143| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 322
Score = 28.7 bits (61), Expect = 3.7
Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 6/101 (5%)
Frame = +2
Query: 122 TSYGFTFKKQVCLGFVEKRDKDGVTQKVDNDYVLSGHYEIDIAGKGTRQK*I------CT 283
T+ T + + + + ++DG + DN + + H E D + + +K
Sbjct: 143 TAESSTISQSLVVSYSSSEEEDGEIESEDNS-LNNSHSENDSKNRVSEKKYEEKTGENLV 201
Query: 284 PRTYQRSIPTRNATSTRQRGNCTSPNSSSAGITSRKTVSSR 406
TYQ +N+ RQ+ + + S+ ITSR T S+
Sbjct: 202 TETYQEQKSYQNSDYERQKSDRERTEAESSQITSRNTDESK 242
>SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)
Length = 1214
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -2
Query: 286 GSADLLLPRTFPGYVDLIMAAQNVIVVNFLRNT-VLIAFLDETKAYLFL 143
G D LLP TF ++ L + V+VVN V+I L A+LF+
Sbjct: 466 GFMDDLLPETFYEFISLAILCFAVVVVNVATMPWVIIGILPLAVAFLFV 514
>SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1050
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 127 TGGGCLTTIVPVSIYRLPAPRP 62
TG CL ++P S LP+P P
Sbjct: 827 TGANCLNPVIPPSTIMLPSPSP 848
>SB_10490| Best HMM Match : Toxin_27 (HMM E-Value=6.4)
Length = 211
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -2
Query: 325 RRVPCRDTSLVSSGSADLLLPRTFPGYVDLIMAAQNVIVVNFLRNTVLIAFLDETKAYL 149
RR CR + S + +LPR +V+ + +Q R TV +A L + + YL
Sbjct: 57 RRAFCRSSMRAESAATGAVLPRIIKCFVNFMTCSQK-------RKTVTLAILSQRRKYL 108
>SB_48266| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 723
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/45 (31%), Positives = 28/45 (62%)
Frame = +2
Query: 245 IAGKGTRQK*ICTPRTYQRSIPTRNATSTRQRGNCTSPNSSSAGI 379
I+ +G+ +C+ + Q SI +R +++ +RG+ +S +SS GI
Sbjct: 523 ISRQGSISSRLCSAISRQGSISSRLSSAISRRGSMSSRSSSDVGI 567
>SB_17294| Best HMM Match : Avirulence (HMM E-Value=1.8)
Length = 771
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 364 TVGARAVSSLPGRRRVPCRDTSLVSSGSADL 272
TV AR V +LP R+R CR + S+ D+
Sbjct: 515 TVTARTVQTLPNRQRALCRHYPIDSAHCTDI 545
>SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2463
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +3
Query: 123 PVTDSHSRNRYALVSSRNAIRTVLRRKLTTITF*AAIMRST*PGKVRGKSKSALPELTNE 302
PVTD + +AL+ S ++T+L R T T ++ + G G ++ L E +
Sbjct: 473 PVTDQNFEGIFALLESFGNVQTILNRNATRFTLLVSLDFDSAGGLTCGSLQTFLLEKSRV 532
Query: 303 VSRQ 314
V ++
Sbjct: 533 VRQK 536
>SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1318
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +2
Query: 284 PRTYQRSIPTRNATSTRQRGNCTSPNSSSAGITSRKTVSSRTGMLN 421
P +YQRS+P ++ST +SP++S+ RK+ SS T LN
Sbjct: 51 PASYQRSVPVSTSSST----PVSSPSNSTPSTPIRKS-SSVTVTLN 91
>SB_10360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 547
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -2
Query: 382 GNAG-RGTVGARAVSSLPGRRRVPCRDTSLVSSGSADLLLPRTFPG 248
GN G RG G+R V PG+ R+ + +G+ + PR F G
Sbjct: 319 GNQGLRGLKGSRGVQGRPGKNGAKGRNGAPGRTGARGKIGPRGFTG 364
>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
Length = 2990
Score = 27.5 bits (58), Expect = 8.5
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Frame = -2
Query: 340 SLPGRRRVPCRDTSLVSSGSADLLLPRTFPGYVD---LIMAAQNVIVVNFLRNTVLIAFL 170
SLP RRR + +S V +G L + FPG L+ V V + ++ +
Sbjct: 1528 SLPARRRRRSQVSSSVIAGGQSLTITGNFPGASTSSVLVTLGDYVCEVTQATASSIVCIV 1587
Query: 169 DETKAYLFLECESVTGGGCLTTIVPVSI 86
E A ++ + GG T+ + V+I
Sbjct: 1588 PEKPAGVYPLNILIGSGGWATSSIKVTI 1615
>SB_3069| Best HMM Match : zf-C2H2 (HMM E-Value=1e-06)
Length = 625
Score = 27.5 bits (58), Expect = 8.5
Identities = 8/35 (22%), Positives = 20/35 (57%)
Frame = +1
Query: 280 HSPNLPTKYPDKERDVYQATRKLHEPQQFLGRHYQ 384
+ PN+P ++P + ++ + + + QQ+ + YQ
Sbjct: 481 YPPNMPRQHPQEHHEMQRRVNYMRQQQQYQQQQYQ 515
>SB_32061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/65 (23%), Positives = 30/65 (46%)
Frame = +1
Query: 151 GMPWFRRETR*GRCYAES*QRLRSERPL*DRHSRERYAAKVNLHSPNLPTKYPDKERDVY 330
G+PW R+ C+ + + ++ H +A ++ L S + P +K+R VY
Sbjct: 812 GVPWCTRKKSRMSCFVAKPRNVYFDQRF---HLAHAFAKRMRLFSEDSPLLLSEKQRSVY 868
Query: 331 QATRK 345
+ + K
Sbjct: 869 KHSTK 873
>SB_16968| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1101
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = -1
Query: 293 KFGECRFTFAAYLS---RLCRSHNGRSERNRCQL 201
K ECRF F + S + C H G S+ +C L
Sbjct: 856 KCAECRFGFYNFTSAGCQACNCHEGGSQSQQCNL 889
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,565,292
Number of Sequences: 59808
Number of extensions: 377071
Number of successful extensions: 1078
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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