Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0812
         (581 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    25   1.4  
AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium ch...    25   2.4  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            23   7.2  
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    23   7.2  
DQ139954-1|ABA29475.1|  451|Anopheles gambiae protein O-fucosylt...    23   9.5  
AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 pro...    23   9.5  

>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +1

Query: 241 RHSRERYAAKVNLHSPNLPTKYPDKERDVYQATRKLHEPQQFLGRHYQ 384
           RH+++R   ++      L + Y  ++  + + TRKLH+ QQ + +  Q
Sbjct: 712 RHTQQR-REQLQRELNELNSAYAKEDERLQEMTRKLHQRQQHMKKLQQ 758


>AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium
           channel protein.
          Length = 572

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 25/90 (27%), Positives = 37/90 (41%)
 Frame = +3

Query: 51  SWTFGRGAGSRYIETGTIVVRQPPPVTDSHSRNRYALVSSRNAIRTVLRRKLTTITF*AA 230
           S+T G   GS+   T  I     P   D +  N Y L + RNA+      KL  +   + 
Sbjct: 480 SFTKGELFGSKPSTTTAIQFLGRPTYADRYDANDYHLHAGRNAMVKEFAAKLKHLVH-SR 538

Query: 231 IMRST*PGKVRGKSKSALPELTNEVSRQGT 320
           + ++   G VR   +S   +L     R GT
Sbjct: 539 LQQAN--GWVRNTFRSRRTQLGFGQERTGT 566


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +3

Query: 423 LTRNSKCLQSKITNRYKINSSNT--*LYRIYIASS*LHLFPRLSYKKLIRF 569
           LT    C ++K  NRY  + +NT   + RIY A+  + +  R + +  IRF
Sbjct: 102 LTLRHYCSETKYRNRYGWDDANTVFLMGRIYNAAGTIGILTR-NKRGAIRF 151


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 204  TFCVTPSLSRFSTKPRHT 151
            T+   P  SR STK +HT
Sbjct: 1280 TYQTLPKASRLSTKEKHT 1297


>DQ139954-1|ABA29475.1|  451|Anopheles gambiae protein
           O-fucosyltransferase 2 protein.
          Length = 451

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -1

Query: 323 SRSLSGYFVGKFGECRFTFAAYLSRLCRSHNGRSERNRCQL 201
           +R++    +  F +   T +A+L  LC   +   E  RCQL
Sbjct: 2   NRTVYSLLLLAFSQIVHTTSAHLRELCEKRDIFFEPYRCQL 42


>AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 protein.
          Length = 2051

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 295  PTKYPDKERDVYQATRKLHEPQQFLG 372
            PT YP+KE D +     +H P+ F G
Sbjct: 1125 PTGYPEKENDDF-----IHMPRWFNG 1145


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 588,784
Number of Sequences: 2352
Number of extensions: 13183
Number of successful extensions: 27
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 55506924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)