Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0812
         (581 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY128477-1|AAM75070.1|  939|Drosophila melanogaster RE39339p pro...   111   5e-25
AE014298-628|AAF45943.3|  939|Drosophila melanogaster CG3626-PA ...   111   5e-25
BT001625-1|AAN71380.1|  907|Drosophila melanogaster RE37361p pro...    45   7e-05
AY051545-1|AAK92969.1|  600|Drosophila melanogaster GH19226p pro...    45   7e-05
AE013599-2554|AAF57796.1|  894|Drosophila melanogaster CG6385-PA...    45   7e-05
L13255-1|AAC37184.1|  359|Drosophila melanogaster lachesin protein.    29   6.1  
BT021229-1|AAX33377.1|  553|Drosophila melanogaster RH42588p pro...    29   6.1  
AY060688-1|AAL28236.1|  512|Drosophila melanogaster GH12726p pro...    29   6.1  
AY051829-1|AAK93253.1|  359|Drosophila melanogaster LD33460p pro...    29   6.1  
AE014298-1829|AAN09643.1|  381|Drosophila melanogaster CG32642-P...    29   6.1  
AE014297-1569|AAF54851.2|  553|Drosophila melanogaster CG12286-P...    29   6.1  
AE013599-1498|AAF58506.1|  359|Drosophila melanogaster CG12369-P...    29   6.1  
AY325814-1|AAP88969.1|  509|Drosophila melanogaster traffic jam ...    28   8.0  
AM412958-1|CAL85581.1|  115|Drosophila melanogaster IM23 protein.      28   8.0  
AM412957-1|CAL85580.1|  115|Drosophila melanogaster IM23 protein.      28   8.0  
AM412956-1|CAL85579.1|  115|Drosophila melanogaster IM23 protein.      28   8.0  
AM412955-1|CAL85578.1|  115|Drosophila melanogaster IM23 protein.      28   8.0  
AE014298-1753|AAF48147.2| 1860|Drosophila melanogaster CG2750-PA...    28   8.0  
AE014134-3104|AAF53804.2|  509|Drosophila melanogaster CG10034-P...    28   8.0  

>AY128477-1|AAM75070.1|  939|Drosophila melanogaster RE39339p protein.
          Length = 939

 Score =  111 bits (268), Expect = 5e-25
 Identities = 56/137 (40%), Positives = 74/137 (54%)
 Frame = +2

Query: 2    GIRXQYVQXXXXXXXXXXXXWSWGGEPIYRDGNYCGQTTTTSYGFTFKKQVCLGFVEKRD 181
            G++  YVQ            W WGGEPIYRDG Y G TTTT YG+TF+KQVCLGFV   D
Sbjct: 797  GVKRMYVQLLLNDHDHEVDMWCWGGEPIYRDGVYVGMTTTTGYGYTFEKQVCLGFVRNFD 856

Query: 182  KDGVTQKVDNDYVLSGHYEIDIAGKGTRQK*ICTPRTYQRSIPTRNATSTRQRGNCTSPN 361
             +G    V N+YVLSGHYE+++AG     K       +  ++PT+     R+  + T   
Sbjct: 857  DEGRELPVTNEYVLSGHYEVEVAGVRFEAK----VNLHSPNLPTKFPDRERETYHATRDK 912

Query: 362  SSSAGITSRKTVSSRTG 412
               A + S   V++  G
Sbjct: 913  PDQADLLSYGGVTTVKG 929


>AE014298-628|AAF45943.3|  939|Drosophila melanogaster CG3626-PA
            protein.
          Length = 939

 Score =  111 bits (268), Expect = 5e-25
 Identities = 56/137 (40%), Positives = 74/137 (54%)
 Frame = +2

Query: 2    GIRXQYVQXXXXXXXXXXXXWSWGGEPIYRDGNYCGQTTTTSYGFTFKKQVCLGFVEKRD 181
            G++  YVQ            W WGGEPIYRDG Y G TTTT YG+TF+KQVCLGFV   D
Sbjct: 797  GVKRMYVQLLLNDHDHEVDMWCWGGEPIYRDGVYVGMTTTTGYGYTFEKQVCLGFVRNFD 856

Query: 182  KDGVTQKVDNDYVLSGHYEIDIAGKGTRQK*ICTPRTYQRSIPTRNATSTRQRGNCTSPN 361
             +G    V N+YVLSGHYE+++AG     K       +  ++PT+     R+  + T   
Sbjct: 857  DEGRELPVTNEYVLSGHYEVEVAGVRFEAK----VNLHSPNLPTKFPDREREAYHATRDK 912

Query: 362  SSSAGITSRKTVSSRTG 412
               A + S   V++  G
Sbjct: 913  PDQADLLSYGGVTTVKG 929


>BT001625-1|AAN71380.1|  907|Drosophila melanogaster RE37361p protein.
          Length = 907

 Score = 45.2 bits (102), Expect = 7e-05
 Identities = 23/66 (34%), Positives = 34/66 (51%)
 Frame = +2

Query: 68   WGGEPIYRDGNYCGQTTTTSYGFTFKKQVCLGFVEKRDKDGVTQKVDNDYVLSGHYEIDI 247
            WG E +YR+G   G      Y +T  K +   +V + D     + +D DY+ +G YE+DI
Sbjct: 818  WGLEGVYRNGEPVGILRRAEYAYTLGKSLGQTYVSRPDG----KIIDADYIRNGEYEVDI 873

Query: 248  AGKGTR 265
             GK  R
Sbjct: 874  LGKKYR 879


>AY051545-1|AAK92969.1|  600|Drosophila melanogaster GH19226p
           protein.
          Length = 600

 Score = 45.2 bits (102), Expect = 7e-05
 Identities = 23/66 (34%), Positives = 34/66 (51%)
 Frame = +2

Query: 68  WGGEPIYRDGNYCGQTTTTSYGFTFKKQVCLGFVEKRDKDGVTQKVDNDYVLSGHYEIDI 247
           WG E +YR+G   G      Y +T  K +   +V + D     + +D DY+ +G YE+DI
Sbjct: 511 WGLEGVYRNGEPVGILRRAEYAYTLGKSLGQTYVSRPDG----KIIDADYIRNGEYEVDI 566

Query: 248 AGKGTR 265
            GK  R
Sbjct: 567 LGKKYR 572


>AE013599-2554|AAF57796.1|  894|Drosophila melanogaster CG6385-PA
           protein.
          Length = 894

 Score = 45.2 bits (102), Expect = 7e-05
 Identities = 23/66 (34%), Positives = 34/66 (51%)
 Frame = +2

Query: 68  WGGEPIYRDGNYCGQTTTTSYGFTFKKQVCLGFVEKRDKDGVTQKVDNDYVLSGHYEIDI 247
           WG E +YR+G   G      Y +T  K +   +V + D     + +D DY+ +G YE+DI
Sbjct: 805 WGLEGVYRNGEPVGILRRAEYAYTLGKSLGQTYVSRPDG----KIIDADYIRNGEYEVDI 860

Query: 248 AGKGTR 265
            GK  R
Sbjct: 861 LGKKYR 866


>L13255-1|AAC37184.1|  359|Drosophila melanogaster lachesin protein.
          Length = 359

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +3

Query: 297 NEVSRQGTRRLPGNEETARAPTVPRPALPAVKLYPAELEC 416
           N VS+   R +    E A   TVPRP L     Y  +LEC
Sbjct: 208 NGVSKGDRRNINVEVEFAPVITVPRPRLGQALQYDMDLEC 247


>BT021229-1|AAX33377.1|  553|Drosophila melanogaster RH42588p
           protein.
          Length = 553

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = -2

Query: 376 AGRGTVGARAVSSLPGRRRVPCRDTSLVSSGSADLLLPRTFPGYVDLI 233
           +G G +    ++ +PG  R+  +  SLVS G   LLLP T   YV L+
Sbjct: 344 SGIGRLIFGVIADMPGVNRMYLQQLSLVSIGLVTLLLPLT-NSYVILV 390


>AY060688-1|AAL28236.1|  512|Drosophila melanogaster GH12726p
           protein.
          Length = 512

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = -2

Query: 376 AGRGTVGARAVSSLPGRRRVPCRDTSLVSSGSADLLLPRTFPGYVDLI 233
           +G G +    ++ +PG  R+  +  SLVS G   LLLP T   YV L+
Sbjct: 303 SGIGRLIFGVIADMPGVNRMYLQQLSLVSIGLVTLLLPLT-NSYVILV 349


>AY051829-1|AAK93253.1|  359|Drosophila melanogaster LD33460p
           protein.
          Length = 359

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +3

Query: 297 NEVSRQGTRRLPGNEETARAPTVPRPALPAVKLYPAELEC 416
           N VS+   R +    E A   TVPRP L     Y  +LEC
Sbjct: 208 NGVSKGDRRNINVEVEFAPVITVPRPRLGQALQYDMDLEC 247


>AE014298-1829|AAN09643.1|  381|Drosophila melanogaster CG32642-PC
           protein.
          Length = 381

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 421 VQHSSSAGYSFTAGNAGRGTVGARAVSSLPG 329
           V++SSS+G +  A  A  G  GA+AV+  PG
Sbjct: 127 VRYSSSSGQNSYAYAAASGPYGAKAVAEAPG 157


>AE014297-1569|AAF54851.2|  553|Drosophila melanogaster CG12286-PA
           protein.
          Length = 553

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = -2

Query: 376 AGRGTVGARAVSSLPGRRRVPCRDTSLVSSGSADLLLPRTFPGYVDLI 233
           +G G +    ++ +PG  R+  +  SLVS G   LLLP T   YV L+
Sbjct: 344 SGIGRLIFGVIADMPGVNRMYLQQLSLVSIGLVTLLLPLT-NSYVILV 390


>AE013599-1498|AAF58506.1|  359|Drosophila melanogaster CG12369-PA,
           isoform A protein.
          Length = 359

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +3

Query: 297 NEVSRQGTRRLPGNEETARAPTVPRPALPAVKLYPAELEC 416
           N VS+   R +    E A   TVPRP L     Y  +LEC
Sbjct: 208 NGVSKGDRRNINVEVEFAPVITVPRPRLGQALQYDMDLEC 247


>AY325814-1|AAP88969.1|  509|Drosophila melanogaster traffic jam
           protein.
          Length = 509

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -2

Query: 412 SSSAGYSFTAGNAGRGTVGARAVSSLPGRRRVPCRDTSLVSSGSADLLLPRTFPG 248
           SS  G    +G+ G G+VG  +        + PCR  S  S+ S++ + PRT  G
Sbjct: 331 SSGGGGGSGSGSGGPGSVGGGSCVITRAALQ-PCRPLSASSTRSSNNMSPRTCSG 384


>AM412958-1|CAL85581.1|  115|Drosophila melanogaster IM23 protein.
          Length = 115

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 15/51 (29%), Positives = 20/51 (39%)
 Frame = -2

Query: 400 GYSFTAGNAGRGTVGARAVSSLPGRRRVPCRDTSLVSSGSADLLLPRTFPG 248
           G S+  G  G+GTV   +  + PG    P R T     G      P  + G
Sbjct: 42  GQSYRTGRPGQGTVYINSPGAYPGALDGPIRRTGAGGGGGGGTRYPDGYSG 92


>AM412957-1|CAL85580.1|  115|Drosophila melanogaster IM23 protein.
          Length = 115

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 15/51 (29%), Positives = 20/51 (39%)
 Frame = -2

Query: 400 GYSFTAGNAGRGTVGARAVSSLPGRRRVPCRDTSLVSSGSADLLLPRTFPG 248
           G S+  G  G+GTV   +  + PG    P R T     G      P  + G
Sbjct: 42  GQSYRTGRPGQGTVYINSPGAYPGALDGPIRRTGAGGGGGGGTRYPDGYSG 92


>AM412956-1|CAL85579.1|  115|Drosophila melanogaster IM23 protein.
          Length = 115

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 15/51 (29%), Positives = 20/51 (39%)
 Frame = -2

Query: 400 GYSFTAGNAGRGTVGARAVSSLPGRRRVPCRDTSLVSSGSADLLLPRTFPG 248
           G S+  G  G+GTV   +  + PG    P R T     G      P  + G
Sbjct: 42  GQSYRTGRPGQGTVYINSPGAYPGALDGPIRRTGAGGGGGGGTRYPDGYSG 92


>AM412955-1|CAL85578.1|  115|Drosophila melanogaster IM23 protein.
          Length = 115

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 15/51 (29%), Positives = 20/51 (39%)
 Frame = -2

Query: 400 GYSFTAGNAGRGTVGARAVSSLPGRRRVPCRDTSLVSSGSADLLLPRTFPG 248
           G S+  G  G+GTV   +  + PG    P R T     G      P  + G
Sbjct: 42  GQSYRTGRPGQGTVYINSPGAYPGALDGPIRRTGAGGGGGGGTRYPDGYSG 92


>AE014298-1753|AAF48147.2| 1860|Drosophila melanogaster CG2750-PA
            protein.
          Length = 1860

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 258  VRGKSKSALPELTNEVSR-QGTRRLPGNEETARAPTVP 368
            V  +++   P+ T  ++R + TRR+P    T R+P+ P
Sbjct: 1783 VANETQPETPQPTRSINRSRSTRRVPSTPRTPRSPSTP 1820


>AE014134-3104|AAF53804.2|  509|Drosophila melanogaster CG10034-PA
           protein.
          Length = 509

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -2

Query: 412 SSSAGYSFTAGNAGRGTVGARAVSSLPGRRRVPCRDTSLVSSGSADLLLPRTFPG 248
           SS  G    +G+ G G+VG  +        + PCR  S  S+ S++ + PRT  G
Sbjct: 331 SSGGGGGSGSGSGGPGSVGGGSCVITRAALQ-PCRPLSASSTRSSNNMSPRTCSG 384


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,578,571
Number of Sequences: 53049
Number of extensions: 560857
Number of successful extensions: 2443
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2437
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2317436688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)