Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0812
         (581 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032631-7|CAB63337.2|  855|Caenorhabditis elegans Hypothetical ...    70   1e-12
Z81527-9|CAI91172.1|  577|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z68227-6|CAA92512.1|  410|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z46828-5|CAA86861.3|  596|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AC006633-4|AAK68376.3| 1128|Caenorhabditis elegans Prion-like-(q...    29   3.2  
Z77655-2|CAB01136.1|  156|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin rec...    28   5.6  
AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-l...    28   5.6  
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z71265-6|CAA95837.1|  399|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z71258-17|CAA95787.1|  399|Caenorhabditis elegans Hypothetical p...    27   9.7  
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ...    27   9.7  
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.    27   9.7  

>AL032631-7|CAB63337.2|  855|Caenorhabditis elegans Hypothetical
           protein Y106G6H.5 protein.
          Length = 855

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 35/85 (41%), Positives = 48/85 (56%)
 Frame = +2

Query: 2   GIRXQYVQXXXXXXXXXXXXWSWGGEPIYRDGNYCGQTTTTSYGFTFKKQVCLGFVEKRD 181
           G+  ++VQ            W  GGE I +DG   G TT+ +YGFT   QVC+G+VE ++
Sbjct: 748 GVSKRFVQLLVDGHDKETDPWPQGGETILKDGRAVGLTTSAAYGFTLGCQVCIGYVENKE 807

Query: 182 KDGVTQKVDNDYVLSGHYEIDIAGK 256
                  V  ++V SGH+EIDIAGK
Sbjct: 808 FG-----VSPEFVSSGHFEIDIAGK 827


>Z81527-9|CAI91172.1|  577|Caenorhabditis elegans Hypothetical
           protein F35E12.7d protein.
          Length = 577

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 5/107 (4%)
 Frame = +2

Query: 107 GQTTTTSYGFTFKKQVCLGFV--EKRDKDGVTQKVDNDYVLSGHYEID--IAGKGTRQK* 274
           G+     Y  +   +V L FV  ++ + DG TQ      V SG +     +    TR   
Sbjct: 443 GRYLNLKYTGSKTSEVILNFVMIDRLNPDGTTQSPGTTVVPSGSFSTAPIVTSVSTR--- 499

Query: 275 ICTPRTYQRSIPT-RNATSTRQRGNCTSPNSSSAGITSRKTVSSRTG 412
               R    + P     TST    +  + N SS+ ITS+ T S  TG
Sbjct: 500 --ATRVSSSTAPVVSTVTSTITSQSIVTTNKSSSPITSKTTTSINTG 544


>Z68227-6|CAA92512.1|  410|Caenorhabditis elegans Hypothetical
           protein F49C12.8 protein.
          Length = 410

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
 Frame = -2

Query: 289 SGSADLLLPR--TFPGYVDLIMAAQNVIVVNFLRNTVLIAFLD-ETKAYLFLEC-ESVTG 122
           +G+ADL L    TF  Y   +M  +N+I+   +  T  +   D  TK     E  E +TG
Sbjct: 209 AGAADLFLEAVPTFGSYE--LMTYENLILYTVITTTFALDRPDLRTKVIRCNEVQEQLTG 266

Query: 121 GGCLTTIVPVSIY 83
           GG   T++PV  Y
Sbjct: 267 GGLNGTLIPVREY 279


>Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical protein
            F11A10.4 protein.
          Length = 1646

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 23/66 (34%), Positives = 33/66 (50%)
 Frame = -2

Query: 412  SSSAGYSFTAGNAGRGTVGARAVSSLPGRRRVPCRDTSLVSSGSADLLLPRTFPGYVDLI 233
            SS   ++ T  + GRG +G  AV+SL  R      D     S + DL LPR+    +++I
Sbjct: 1517 SSDGAHTNTEEDEGRGILGNVAVTSLLQRCTQVMSDFCKDWSAAGDLRLPRS--RILEII 1574

Query: 232  MAAQNV 215
             A Q V
Sbjct: 1575 SALQAV 1580


>Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical protein
            F11A10.4 protein.
          Length = 1646

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 23/66 (34%), Positives = 33/66 (50%)
 Frame = -2

Query: 412  SSSAGYSFTAGNAGRGTVGARAVSSLPGRRRVPCRDTSLVSSGSADLLLPRTFPGYVDLI 233
            SS   ++ T  + GRG +G  AV+SL  R      D     S + DL LPR+    +++I
Sbjct: 1517 SSDGAHTNTEEDEGRGILGNVAVTSLLQRCTQVMSDFCKDWSAAGDLRLPRS--RILEII 1574

Query: 232  MAAQNV 215
             A Q V
Sbjct: 1575 SALQAV 1580


>Z46828-5|CAA86861.3|  596|Caenorhabditis elegans Hypothetical
           protein R03D7.8 protein.
          Length = 596

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 432 NSKCLQSKITNRYKINS 482
           NS C+Q +I +RYKINS
Sbjct: 54  NSACVQKRIVSRYKINS 70


>AC006633-4|AAK68376.3| 1128|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 34,
            isoform a protein.
          Length = 1128

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +3

Query: 267  KSKSALPELTNEVSRQGTRRLPGNEETARAPTVPRPALPAVKLY 398
            ++KS + E+T E SRQ T R+ G     +  +V   A P  KLY
Sbjct: 950  RTKSQMSEVT-ESSRQNTPRMRGQSSVEQRVSVSSLAEPTHKLY 992


>Z77655-2|CAB01136.1|  156|Caenorhabditis elegans Hypothetical
           protein C56A3.2 protein.
          Length = 156

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +1

Query: 289 NLPTKYPDKERDVYQATRKLHEPQQFL 369
           NL T +P +ER++  + ++ H P+Q++
Sbjct: 124 NLETIFPKEERELIVSRKRRHHPKQYI 150


>U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin receptor
            protein 2 protein.
          Length = 1338

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 341  GNCTSPNSSSAGITSRKTVSSRTGMLNFDK 430
            G C  P +SSA   SR  +SSR  +LN  K
Sbjct: 1151 GICCLPETSSAAYNSRSFLSSRQRILNMIK 1180


>AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-like
            protein LAT-2 protein.
          Length = 1338

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 341  GNCTSPNSSSAGITSRKTVSSRTGMLNFDK 430
            G C  P +SSA   SR  +SSR  +LN  K
Sbjct: 1151 GICCLPETSSAAYNSRSFLSSRQRILNMIK 1180


>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical
           protein T12D8.1 protein.
          Length = 2561

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -1

Query: 83  SAPRPTTKGPARGRGR 36
           S PR   KGP RGRGR
Sbjct: 321 SVPRQPGKGPGRGRGR 336


>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical
           protein T12D8.1 protein.
          Length = 2561

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -1

Query: 83  SAPRPTTKGPARGRGR 36
           S PR   KGP RGRGR
Sbjct: 321 SVPRQPGKGPGRGRGR 336


>Z71265-6|CAA95837.1|  399|Caenorhabditis elegans Hypothetical
           protein M05B5.5a protein.
          Length = 399

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 257 LSRLCRSHNGRSERNRCQLSA*HRPYRV 174
           L R+C  HN  +ERN+ +L   H    V
Sbjct: 325 LGRMCTQHNQNTERNQTKLGILHNAVSV 352


>Z71258-17|CAA95787.1|  399|Caenorhabditis elegans Hypothetical
           protein M05B5.5a protein.
          Length = 399

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 257 LSRLCRSHNGRSERNRCQLSA*HRPYRV 174
           L R+C  HN  +ERN+ +L   H    V
Sbjct: 325 LGRMCTQHNQNTERNQTKLGILHNAVSV 352


>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
           protein.
          Length = 1829

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = +2

Query: 191 VTQKVDNDYVLSGHYEIDIAGKGTRQK*ICTPRTYQRSIPTRNATSTRQRGNCTSPNS 364
           V  K   D++ +    +    +G++   + TP    RS PT+  ++ R+R +  +P+S
Sbjct: 138 VKYKEYQDHMAAQGKPVQKQARGSKTPAVSTPVIPPRSAPTKTRSARRKRRDSDAPDS 195


>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
          Length = 1829

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = +2

Query: 191 VTQKVDNDYVLSGHYEIDIAGKGTRQK*ICTPRTYQRSIPTRNATSTRQRGNCTSPNS 364
           V  K   D++ +    +    +G++   + TP    RS PT+  ++ R+R +  +P+S
Sbjct: 138 VKYKEYQDHMAAQGKPVQKQARGSKTPAVSTPVIPPRSAPTKTRSARRKRRDSDAPDS 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,953,815
Number of Sequences: 27780
Number of extensions: 279692
Number of successful extensions: 927
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)