Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0812
         (581 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    28   0.058
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    27   0.13 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    27   0.18 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    27   0.18 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   3.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.9  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 28.3 bits (60), Expect = 0.058
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -2

Query: 295 VSSGSADLLLPRTFPGYVDLIMAA--QNVIVVNFLRNTVLIAFLDETK 158
           VSSG  D       P + DL++A     +I+V  + NT++IA +  T+
Sbjct: 19  VSSGERDTRTEYYLPNWTDLVLAGLFTMLIIVTIVGNTLVIAAVITTR 66


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 20/60 (33%), Positives = 28/60 (46%)
 Frame = -2

Query: 388 TAGNAGRGTVGARAVSSLPGRRRVPCRDTSLVSSGSADLLLPRTFPGYVDLIMAAQNVIV 209
           T  N   G+ G R  S   G +  P    SL +SGS+ +L P +  GYV  I   Q  ++
Sbjct: 282 TTMNGSPGSGGIR--SDQMGVKIEPAEAESLSTSGSSGILTPVSPYGYVKPISPEQEELI 339


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 259 YAAKVNLHSPNLPTKYPDKERD 324
           YA++ ++HS N+  KYP  E +
Sbjct: 327 YASRSDMHSDNIEKKYPPSETE 348


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 259 YAAKVNLHSPNLPTKYPDKERD 324
           YA++ ++HS N+  KYP  E +
Sbjct: 327 YASRSDMHSDNIEKKYPPSETE 348


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 280 HSPNLPTKYPDKERDV 327
           H  N   KY DKERD+
Sbjct: 506 HPLNKSLKYSDKERDL 521


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -1

Query: 326 TSRSLSGYFVGKFGECRFTF 267
           TS+   G+F G F     TF
Sbjct: 206 TSQQYYGHFAGNFSSISITF 225


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,568
Number of Sequences: 438
Number of extensions: 3775
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)