Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0810
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    28   0.95 
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    27   1.7  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    26   5.1  
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    25   6.7  
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   8.8  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.8  
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy...    25   8.8  

>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -1

Query: 277 LFELFAGLNFISVVLKVE-EVTKLYSSPSLRSSTVGVTALAALRVIRPTPMVFMNSSKFS 101
           + +LFA +   SV L  +  + + +  P +      +T LAA    R    V  N +KFS
Sbjct: 216 ILKLFANIVANSVALTHDYSLQQSHEDPIIEPDNKFLTELAAYFYFRQQGWVVKNGTKFS 275

Query: 100 EEVILY 83
            + +LY
Sbjct: 276 VDFLLY 281


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +2

Query: 263 EEFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAVMTAKDV 430
           EE  ED   G    + CT + N    + +  D +E   +   GP E++  M+  DV
Sbjct: 220 EETNEDDLLGQS-PTACTTDANIDNSIPENSDKIEEVSIESSGPSEVEDEMSEYDV 274


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +3

Query: 186 LRKDGDEYNL----VTSSTFKTTEMKFSPAKSSKRTALTVLR*NPYAHSKATPS 335
           LR D  +Y L    +T+S   +    F+P KSS +   T+   +  +H+ AT S
Sbjct: 361 LRADTKQYGLALPKITNSNLISPNQTFNPVKSSVKALPTLEPPSSPSHATATSS 414


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
 Frame = +3

Query: 96  SSENFDEFMKTIGVGLITRKAAN--AVTPTVELRKDGDEYNLVTSSTFKTTEMKFSPAKS 269
           S+ +  E + TI     TR +++  +++P  +   DG      TS T  +T +  S A S
Sbjct: 139 STTSITENLPTIDPTRSTRSSSHIQSLSPESKQTSDGHRPPSPTSITTTSTSIDPSVAFS 198

Query: 270 SKRTALTVLR*NPYAHSKATPSSKSRRPPTVLKSLTSGNSALR 398
           SK T  T     P +       +      + L+++ S  S  R
Sbjct: 199 SKSTLATTRTNAPLSRPSQPTKASPLNKFSALEAIQSARSHAR 241


>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 27/126 (21%), Positives = 55/126 (43%), Gaps = 1/126 (0%)
 Frame = +3

Query: 21  LKTFLLNL*S*SIKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDG 200
           +K F+  L S  +  E + K    T+ +       +  +G    K  + V P + +  + 
Sbjct: 19  IKRFVFELSSLGLSAETISKLMAPTTVDPQQAITLSYSLG----KEGHIVVPKIIINVNF 74

Query: 201 DEYNLVTSSTFKTTEMKFSPAKSSKRTALTVLR*NPYAHSKATPSSKSRRPPT-VLKSLT 377
           D+       T K     F    +S    +T +R N  ++  +TPS  +++PPT  L S++
Sbjct: 75  DKLK-----TDKFAASMFKQLNASNM--ITTVRSNYASNVPSTPSDSTQQPPTNTLPSVS 127

Query: 378 SGNSAL 395
           + + ++
Sbjct: 128 ASSQSV 133


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 198 GDEYNLVTSSTFKTTEMKFSPAKSSKRTALTVLR*NPYAHSKATPSS 338
           G E    ++S+  ++   ++PA S+  T  +V      + S  TPSS
Sbjct: 730 GTEIKTASTSSGSSSSSSYTPASSTSTTTSSVSSRQSSSSSSFTPSS 776


>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 764

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +3

Query: 84  YKMTSSENFDEFMKTIGVGLITR 152
           +K++S++  DEF++    G+ITR
Sbjct: 140 FKLSSTKALDEFLEAKEAGIITR 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,178,320
Number of Sequences: 5004
Number of extensions: 42222
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)