Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0810
         (622 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0192 - 5589395-5590021,5590120-5590560,5590781-5591242           31   0.97 
03_02_0584 - 9650996-9651488,9651630-9652049,9652129-9652158,965...    28   5.2  
02_02_0007 + 6056281-6057024,6057273-6057539,6057622-6057765,605...    28   5.2  
05_07_0010 - 27024013-27024171,27024286-27024699,27025389-270254...    28   6.9  
02_01_0436 - 3166764-3166949,3167115-3167258,3167343-3167469,316...    27   9.1  
01_06_0061 - 26071984-26072343,26072792-26073139,26073228-260733...    27   9.1  

>09_02_0192 - 5589395-5590021,5590120-5590560,5590781-5591242
          Length = 509

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = -1

Query: 349 LLDLLEGVAFECAYGFHL--STVSAVLFELFAGLNFISVVLKVEEVTKLYSSPSL 191
           L+D+L G+  +  +GFHL  S + A++ ++FAG    S       +++L  +PS+
Sbjct: 274 LVDVLIGLQGKGGFGFHLDNSKIKAIILDMFAGGTGTSASAMEWGMSELMRNPSV 328


>03_02_0584 - 9650996-9651488,9651630-9652049,9652129-9652158,
            9652201-9652287,9652657-9653669,9653832-9654854,
            9654946-9654969
          Length = 1029

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 293  HRQRGPLRTLRRAELHLSGLEG*RGD*IVFVTILTELHGRGD 168
            H  RG  R +RR  +H  G+EG   +  +    L ELH + +
Sbjct: 896  HDDRGMQRNMRRCGMHHGGVEGDSFEPHLHPAQLAELHAKAE 937


>02_02_0007 +
           6056281-6057024,6057273-6057539,6057622-6057765,
           6057844-6058191,6058713-6059102
          Length = 630

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
 Frame = -1

Query: 376 VSDFKTVGGLLD---LLEGVAFECAYGFHLSTVSAVLFELFAGLNFISVVLKVEEVTKLY 206
           + DF T  G+     +L G      +G+ ++        L  G+ F S++L  E +T L 
Sbjct: 396 MGDFSTATGIATFTMMLLGRVILRKFGWGVAATITPAVLLLTGVGFFSLILFGEPLTPLM 455

Query: 205 SSPSLRSSTVGVTALAALRVIRPTPMVFMNSSKFS 101
           +       T+G+T L A   +     +F  S+K+S
Sbjct: 456 A-------TLGMTPLLAAVYVGAMQNIFSKSAKYS 483


>05_07_0010 -
           27024013-27024171,27024286-27024699,27025389-27025445,
           27025544-27025637,27025775-27025868,27025949-27026117,
           27026450-27026554,27026665-27026784,27027190-27027735
          Length = 585

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
 Frame = -1

Query: 406 FHLLRA-EFPDVSDFKTVGGLLDLLEGVAFECAYGFHLSTVSAVLFELFAGLNFISVVLK 230
           F L+++ EFP   + K +G + DL +G+A E      + TV   L     GL+   +V +
Sbjct: 246 FDLMQSKEFPYNVETKILGDVQDLPKGIARENKI---IQTVMRQLLFALDGLHSTGIVHR 302

Query: 229 -VEEVTKLYSSPSLRSSTVGVTALAALRV-IRPTPMVFMNSSKFS 101
            V+    ++S  S     + + A A LRV I   P  F+   +++
Sbjct: 303 DVKPQNVIFSEGSRTFKIIDLGAAADLRVGINYIPSEFLLDPRYA 347


>02_01_0436 -
           3166764-3166949,3167115-3167258,3167343-3167469,
           3167746-3167825,3167933-3168184,3168271-3168399,
           3169039-3169088,3169221-3169323,3169429-3169548,
           3169725-3169786,3169873-3169915,3169995-3170183,
           3170299-3170367,3170460-3170539,3170648-3170723
          Length = 569

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 451 LVDSGASHVLSCHHSFHLLRAEFPDVSDFKTVGG 350
           L+D+           +HL   +FPDV  FK V G
Sbjct: 498 LIDNLGDEFAKVQREYHLPAGDFPDVEHFKEVLG 531


>01_06_0061 -
           26071984-26072343,26072792-26073139,26073228-26073371,
           26073454-26073723,26075019-26075825
          Length = 642

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 10/109 (9%)
 Frame = -1

Query: 397 LRAEFPD-------VSDFKTVGGLLD---LLEGVAFECAYGFHLSTVSAVLFELFAGLNF 248
           L+A+FP        + DF T  G+     +L G      +G+ ++ +      L  G+ F
Sbjct: 404 LKAQFPSPNEYSSFMGDFSTATGIATFTMMLLGRIILRKFGWGVAAMITPTVLLLTGVGF 463

Query: 247 ISVVLKVEEVTKLYSSPSLRSSTVGVTALAALRVIRPTPMVFMNSSKFS 101
            S++L  + +T     P L  +T+G+T L A   +     +F  S+K+S
Sbjct: 464 FSLILFGQPLT-----PML--ATMGMTPLLAAVYVGALQNIFSKSAKYS 505


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,726,312
Number of Sequences: 37544
Number of extensions: 308052
Number of successful extensions: 836
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)