Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0810
         (622 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42588| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.33 
SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_46289| Best HMM Match : DUF1690 (HMM E-Value=0.32)                  29   3.0  
SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)                 28   7.0  
SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_37811| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_4571| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.3  

>SB_42588| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +2

Query: 260 GEEFEEDRADGAKVKSVCTFEGNTLK 337
           G+E E+D  DG+K  S CTFEG T++
Sbjct: 25  GDEHEKDLRDGSKRISGCTFEGITMQ 50


>SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2179

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 26/73 (35%), Positives = 34/73 (46%)
 Frame = +3

Query: 192  KDGDEYNLVTSSTFKTTEMKFSPAKSSKRTALTVLR*NPYAHSKATPSSKSRRPPTVLKS 371
            K    Y  +TSS   T   K + ++S+ R A      +   H+K T SSKS    T+   
Sbjct: 1710 KSSTRYAKLTSSKSTTYHAKLTSSESATRYAKRTSSKSTTYHAKLT-SSKS---ATLYAK 1765

Query: 372  LTSGNSALRR*KL 410
            LTS  SA R  KL
Sbjct: 1766 LTSSKSATRYAKL 1778


>SB_46289| Best HMM Match : DUF1690 (HMM E-Value=0.32)
          Length = 947

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = +3

Query: 144  ITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFSPAKS---SKRTALTVLR*NPYA 314
            +TRKAA  +  ++     G+ Y+ V ++T  T+    S + S   + RT+   +  NP  
Sbjct: 843  VTRKAARVLRTSIPRSGSGNSYS-VMATTIPTSSSATSDSSSPHPAMRTSSFTISGNPSP 901

Query: 315  HSKATPSSKSRRPPTVL 365
              ++TP  + R    +L
Sbjct: 902  AMRSTPDRQRRTYQQIL 918


>SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)
          Length = 747

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -1

Query: 136 TPMVFMNSSKFSEEVILYFLPTNSIFID*LYRFKRKVFNTSVF 8
           TP++ + +SK    ++++F P NS+    LY F  K F   +F
Sbjct: 527 TPLIDVTASK---TLLVFFFPINSLCNPFLYAFFTKAFKRELF 566


>SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 214 KLYSSPSLRSSTVGVTALAALRVIRPTPMV 125
           +L+ SP+LRS  +G+   +AL+ + P  MV
Sbjct: 13  RLFHSPNLRSDAIGIFR-SALKAVTPQEMV 41


>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5445

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 162  NAVTPTVELRKDGDEYNLVTSSTFKTTEMKFSPAKSSK-RTALTVLR 299
            NA   TV + ++GDE  L   S+    E KFS  K+S   T L  LR
Sbjct: 2829 NATVITVHIGEEGDEEELNAISSDPDKEHKFSIGKNSDVSTILPSLR 2875


>SB_37811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 738

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -1

Query: 253 NFISVVLKVEEVTKLYSSPSLRSSTVGVTALAAL-RVIRPTPMVFMNSSKFSEEVILYFL 77
           NF+  V   E    +   P +  +  G T+  ++ R  +PTP+    +    E +  YF+
Sbjct: 387 NFVQHVGLPERQLAIRVCPRMGKAHNGETSYGSIKRRAQPTPLNVQRTQGGHEGIAFYFI 446

Query: 76  PTNSIFID 53
            + S+FI+
Sbjct: 447 FSGSVFIN 454


>SB_4571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 737

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = +2

Query: 254 QPGEEFEEDRADGAKVKSVCTFEGNTLKQV--QKAPDGLEVTYVREFGPEEMKAVMTAKD 427
           +PGE +E  R    K+   C F+  T  ++   +   G+  T VRE    E K  +   D
Sbjct: 558 EPGESYEHYRTALGKLAESCEFDTITPDEILRDRLLFGIHDTKVRERLLRESKLTLAKTD 617

Query: 428 VTC 436
             C
Sbjct: 618 EIC 620


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,540,949
Number of Sequences: 59808
Number of extensions: 331788
Number of successful extensions: 980
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)