Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0810
         (622 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    82   4e-18
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    37   2e-04
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    36   2e-04
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.2  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    22   4.2  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    22   4.2  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    22   4.2  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   7.3  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   9.7  

>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 82.2 bits (194), Expect = 4e-18
 Identities = 35/63 (55%), Positives = 50/63 (79%)
 Frame = +3

Query: 66  EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTE 245
           +F+GK+YK+ SSENFD+FMK +GVG++TRK  ++V+P VEL ++   Y L T+S FK TE
Sbjct: 3   DFLGKRYKLYSSENFDDFMKALGVGIMTRKVGSSVSPVVELTENNGLYTLKTTSPFKNTE 62

Query: 246 MKF 254
           +KF
Sbjct: 63  IKF 65



 Score = 81.4 bits (192), Expect = 6e-18
 Identities = 39/66 (59%), Positives = 45/66 (68%)
 Frame = +2

Query: 260 GEEFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAVMTAKDVTCT 439
           GEEFEE+  DG KVKSVCT +GN L QVQK     + T  REF   EMKA+M   D+ CT
Sbjct: 68  GEEFEEETVDGRKVKSVCTLDGNKLIQVQKGEK--QTTIEREFSSTEMKAIMKVDDIICT 125

Query: 440 RVYKVQ 457
           RVYK+Q
Sbjct: 126 RVYKIQ 131


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 36.7 bits (81), Expect = 2e-04
 Identities = 21/64 (32%), Positives = 32/64 (50%)
 Frame = +3

Query: 63  MEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTT 242
           ++F GK ++  S  NF+EF K +G   +         P+ EL K+GDE+   +SS   T 
Sbjct: 2   VQFEGK-FQFVSQNNFEEFAKVLGDQNLVNTVLQP-RPSFELSKNGDEWTFTSSSGDNTY 59

Query: 243 EMKF 254
              F
Sbjct: 60  TKTF 63


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 36.3 bits (80), Expect = 2e-04
 Identities = 21/63 (33%), Positives = 31/63 (49%)
 Frame = +3

Query: 66  EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTE 245
           +F GK ++  S  NF+EF K +G   +         P+ EL K+GDE+   +SS   T  
Sbjct: 1   QFEGK-FQFVSQNNFEEFAKVLGDQNLVNTVLQP-RPSFELSKNGDEWTFTSSSGDNTYT 58

Query: 246 MKF 254
             F
Sbjct: 59  KTF 61


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -1

Query: 475 RSRVLLLDLVDSGASHVLSCHHSFHLLRAEFPDVSDFKTV 356
           RSR+  L   D G S   S   +  L+R E  D  D +T+
Sbjct: 25  RSRIARLGRDDGGKSRQSSFEVTSLLMREETEDAEDTQTL 64


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -1

Query: 250 FISVVLKVEEVTKLYSSPSLRSSTV 176
           FIS+++  +E+  + +SP L + T+
Sbjct: 9   FISLIILNDEIYNIIASPQLNNPTL 33


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 311 CTFEGNTLKQVQKAPDGL 364
           CT EGN LK+V   PD L
Sbjct: 57  CTAEGNELKRV--LPDAL 72


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 311 CTFEGNTLKQVQKAPDGL 364
           CT EGN LK+V   PD L
Sbjct: 57  CTAEGNELKRV--LPDAL 72


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 311 CTFEGNTLKQVQKAPDGL 364
           CT EGN LK+V   PD L
Sbjct: 57  CTAEGNELKRV--LPDAL 72


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 280 VLFELFAGLNFISVVLKVEEVTKL 209
           V FEL +    I+ V+ +E++TKL
Sbjct: 78  VYFELLSPNRTINSVVYIEQLTKL 101


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/48 (20%), Positives = 24/48 (50%)
 Frame = +2

Query: 326 NTLKQVQKAPDGLEVTYVREFGPEEMKAVMTAKDVTCTRVYKVQ*KDS 469
           + +K +  +PD +E     ++  E  +  +  KDV+   ++ +Q  D+
Sbjct: 184 SNIKVISISPDLVETDMTAQWLKENSRLALKPKDVSNCVLFALQTPDN 231


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,806
Number of Sequences: 438
Number of extensions: 2797
Number of successful extensions: 17
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)