Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0810
         (622 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61940.1 68418.m07775 ubiquitin carboxyl-terminal hydrolase-r...    29   2.5  
At5g24880.1 68418.m02946 expressed protein ; expression supporte...    28   5.7  
At3g19970.1 68416.m02527 expressed protein                             28   5.7  
At1g69850.1 68414.m08039 nitrate transporter (NTL1) identical to...    27   7.6  
At1g27040.2 68414.m03296 nitrate transporter, putative contains ...    27   7.6  
At1g27040.1 68414.m03297 nitrate transporter, putative contains ...    27   7.6  

>At5g61940.1 68418.m07775 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1094

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 22/54 (40%), Positives = 29/54 (53%)
 Frame = +3

Query: 318 SKATPSSKSRRPPTVLKSLTSGNSALRR*KL**QLRT*LAPESTRSSKRTLLRG 479
           SK  P SK RR  +  K  TS +S+L +  +  +    L PEST SS RT+  G
Sbjct: 736 SKEKPQSKKRRDRSKKKPSTSISSSLDK-TVEHKPSVNLKPESTSSSLRTIEEG 788


>At5g24880.1 68418.m02946 expressed protein ; expression supported
           by MPSS
          Length = 443

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +2

Query: 2   GAKNRRIKNLSLKSIKLIYKNGIRRQEIQDDFLREL**VHEDHRRGSDH 148
           G++N RIK  S K I L   +       Q+D   E+  V  DH + SDH
Sbjct: 173 GSENVRIKKASDKEIAL---DSASMSSAQEDHQEEILKVESDHLQVSDH 218


>At3g19970.1 68416.m02527 expressed protein
          Length = 434

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -1

Query: 289 VSAVLFELFAGLNFIS-VVLKVEEVTKLYSSPSLRSSTVGVTALAALRVI 143
           VS V     A L+F+S + + V  V  L S+PS   +T  VT+L+ALR +
Sbjct: 62  VSQVSASKLADLSFVSRICVPVPNVDLLASNPSCSLAT-SVTSLSALRSV 110


>At1g69850.1 68414.m08039 nitrate transporter (NTL1) identical to
           nitrate transporter (NTL1) GI:3377517 [Arabidopsis
           thaliana]
          Length = 585

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 87  KMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDG 200
           K T +E     ++ IGVGL+    A AV   VE+++ G
Sbjct: 414 KATKTETGVTHLQRIGVGLVLSILAMAVAALVEIKRKG 451


>At1g27040.2 68414.m03296 nitrate transporter, putative contains
           Pfam profile: PF00854 POT family; similar to nitrate
           transporter (NTL1) GI:3377517 [Arabidopsis thaliana]
          Length = 563

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 87  KMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRK 194
           K+T SE     ++ IGVGL+    A AV   VEL++
Sbjct: 393 KVTKSEIGITHLQRIGVGLVLSIVAMAVAALVELKR 428


>At1g27040.1 68414.m03297 nitrate transporter, putative contains
           Pfam profile: PF00854 POT family; similar to nitrate
           transporter (NTL1) GI:3377517 [Arabidopsis thaliana]
          Length = 567

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 87  KMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRK 194
           K+T SE     ++ IGVGL+    A AV   VEL++
Sbjct: 397 KVTKSEIGITHLQRIGVGLVLSIVAMAVAALVELKR 432


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,593,983
Number of Sequences: 28952
Number of extensions: 234458
Number of successful extensions: 683
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)