Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0800
         (597 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0225 - 1650665-1652743                                           34   0.099
07_03_1626 + 28223967-28225294,28225506-28225779,28225939-282262...    27   8.6  

>07_01_0225 - 1650665-1652743
          Length = 692

 Score = 33.9 bits (74), Expect = 0.099
 Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -2

Query: 254 HPCVFF--LVGINQSFHWHFSFFAFLLVSFG 168
           HPC+F    V + Q+ H  F FF FLLVSFG
Sbjct: 7   HPCIFLDLFVQVRQTSHTKF-FFLFLLVSFG 36


>07_03_1626 +
           28223967-28225294,28225506-28225779,28225939-28226230,
           28226492-28226651,28226809-28226917,28227004-28227099
          Length = 752

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +1

Query: 538 EKPEPEFET*RMDLELFKKS 597
           E+PE EFE  R++LELF  S
Sbjct: 543 EQPEYEFEAVRLELELFSPS 562


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,100,964
Number of Sequences: 37544
Number of extensions: 160639
Number of successful extensions: 249
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)