Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0800
         (597 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48886| Best HMM Match : 4F5 (HMM E-Value=0.037)                     42   4e-04
SB_48777| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_12467| Best HMM Match : Ank (HMM E-Value=3.2e-10)                   28   5.0  
SB_2367| Best HMM Match : HEAT (HMM E-Value=1.1e-07)                   28   6.6  

>SB_48886| Best HMM Match : 4F5 (HMM E-Value=0.037)
          Length = 476

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 21/42 (50%), Positives = 30/42 (71%)
 Frame = +2

Query: 125 RMTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERKHR 250
           R++ GNQR+LARAKNQKKQ   +  ++ + K G +L +RK R
Sbjct: 214 RVSGGNQRELARAKNQKKQTGKKASEHDANK-GQNLTDRKQR 254


>SB_48777| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 170

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 125 RMTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERKHRDV 256
           R     QR+LAR KN  ++ E Q    A  K  L L+++K++++
Sbjct: 6   RQLNRTQRELARDKNALERQEKQLAATALAKQLLQLRKQKNKNM 49


>SB_12467| Best HMM Match : Ank (HMM E-Value=3.2e-10)
          Length = 444

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 158 RAKNQKKQVEMQKKKNASEKTGLSLQERK 244
           +AKN+KKQ E++KKK    +  +  + RK
Sbjct: 357 QAKNEKKQREIEKKKEEEARQQMEREMRK 385


>SB_2367| Best HMM Match : HEAT (HMM E-Value=1.1e-07)
          Length = 653

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 131 TRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERKHRD 253
           T  N ++  R KN+K+ V+ Q+ KNA   +  ++   K  D
Sbjct: 169 TEPNSKNQTRGKNKKESVQEQESKNAVTVSNATVTGTKKLD 209


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,285,496
Number of Sequences: 59808
Number of extensions: 200716
Number of successful extensions: 444
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)