Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0800
         (597 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC022326-1|AAH22326.2|   59|Homo sapiens small EDRK-rich factor ...    45   2e-04
BC015491-1|AAH15491.2|   59|Homo sapiens small EDRK-rich factor ...    45   2e-04
AF073298-1|AAC63516.1|   59|Homo sapiens small EDRK-rich factor ...    45   2e-04
BC021174-1|AAH21174.1|   62|Homo sapiens small EDRK-rich factor ...    42   0.002
AF073518-1|AAC63517.1|   62|Homo sapiens small EDRK-rich factor ...    42   0.002
BC104738-1|AAI04739.1|  110|Homo sapiens small EDRK-rich factor ...    37   0.047
BC103687-1|AAI03688.1|  110|Homo sapiens small EDRK-rich factor ...    37   0.047
BC101970-1|AAI01971.1|  110|Homo sapiens SERF1B protein protein.       37   0.047
BC093882-1|AAH93882.1|  110|Homo sapiens small EDRK-rich factor ...    37   0.047
BC093880-1|AAH93880.1|  110|Homo sapiens small EDRK-rich factor ...    37   0.047
BC035932-1|AAH35932.1|  110|Homo sapiens small EDRK-rich factor ...    37   0.047
AF073519-1|AAC63518.1|  110|Homo sapiens small EDRK-rich factor ...    37   0.047

>BC022326-1|AAH22326.2|   59|Homo sapiens small EDRK-rich factor 2
           protein.
          Length = 59

 Score = 45.2 bits (102), Expect = 2e-04
 Identities = 24/42 (57%), Positives = 27/42 (64%)
 Frame = +2

Query: 128 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERKHRD 253
           MTRGNQR+LAR KN KKQ +  K K   +  GLS   RK RD
Sbjct: 1   MTRGNQRELARQKNMKKQSDSVKGKRRDD--GLSAAARKQRD 40


>BC015491-1|AAH15491.2|   59|Homo sapiens small EDRK-rich factor 2
           protein.
          Length = 59

 Score = 45.2 bits (102), Expect = 2e-04
 Identities = 24/42 (57%), Positives = 27/42 (64%)
 Frame = +2

Query: 128 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERKHRD 253
           MTRGNQR+LAR KN KKQ +  K K   +  GLS   RK RD
Sbjct: 1   MTRGNQRELARQKNMKKQSDSVKGKRRDD--GLSAAARKQRD 40


>AF073298-1|AAC63516.1|   59|Homo sapiens small EDRK-rich factor 2
           protein.
          Length = 59

 Score = 45.2 bits (102), Expect = 2e-04
 Identities = 24/42 (57%), Positives = 27/42 (64%)
 Frame = +2

Query: 128 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERKHRD 253
           MTRGNQR+LAR KN KKQ +  K K   +  GLS   RK RD
Sbjct: 1   MTRGNQRELARQKNMKKQSDSVKGKRRDD--GLSAAARKQRD 40


>BC021174-1|AAH21174.1|   62|Homo sapiens small EDRK-rich factor 1A
           (telomeric) protein.
          Length = 62

 Score = 41.5 bits (93), Expect = 0.002
 Identities = 21/42 (50%), Positives = 27/42 (64%)
 Frame = +2

Query: 128 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERKHRD 253
           M RGNQR+LAR KN KK  E+ K K   ++  L+  +RK RD
Sbjct: 1   MARGNQRELARQKNMKKTQEISKGKR--KEDSLTASQRKQRD 40


>AF073518-1|AAC63517.1|   62|Homo sapiens small EDRK-rich factor 1,
           short isoform protein.
          Length = 62

 Score = 41.5 bits (93), Expect = 0.002
 Identities = 21/42 (50%), Positives = 27/42 (64%)
 Frame = +2

Query: 128 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERKHRD 253
           M RGNQR+LAR KN KK  E+ K K   ++  L+  +RK RD
Sbjct: 1   MARGNQRELARQKNMKKTQEISKGKR--KEDSLTASQRKQRD 40


>BC104738-1|AAI04739.1|  110|Homo sapiens small EDRK-rich factor 1B
           (centromeric) protein.
          Length = 110

 Score = 37.1 bits (82), Expect = 0.047
 Identities = 19/39 (48%), Positives = 25/39 (64%)
 Frame = +2

Query: 128 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERK 244
           M RGNQR+LAR KN KK  E+ K K   ++  L+  +RK
Sbjct: 1   MARGNQRELARQKNMKKTQEISKGKR--KEDSLTASQRK 37


>BC103687-1|AAI03688.1|  110|Homo sapiens small EDRK-rich factor 1B
           (centromeric) protein.
          Length = 110

 Score = 37.1 bits (82), Expect = 0.047
 Identities = 19/39 (48%), Positives = 25/39 (64%)
 Frame = +2

Query: 128 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERK 244
           M RGNQR+LAR KN KK  E+ K K   ++  L+  +RK
Sbjct: 1   MARGNQRELARQKNMKKTQEISKGKR--KEDSLTASQRK 37


>BC101970-1|AAI01971.1|  110|Homo sapiens SERF1B protein protein.
          Length = 110

 Score = 37.1 bits (82), Expect = 0.047
 Identities = 19/39 (48%), Positives = 25/39 (64%)
 Frame = +2

Query: 128 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERK 244
           M RGNQR+LAR KN KK  E+ K K   ++  L+  +RK
Sbjct: 1   MARGNQRELARQKNMKKTQEISKGKR--KEDSLTASQRK 37


>BC093882-1|AAH93882.1|  110|Homo sapiens small EDRK-rich factor 1A,
           telomeric protein.
          Length = 110

 Score = 37.1 bits (82), Expect = 0.047
 Identities = 19/39 (48%), Positives = 25/39 (64%)
 Frame = +2

Query: 128 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERK 244
           M RGNQR+LAR KN KK  E+ K K   ++  L+  +RK
Sbjct: 1   MARGNQRELARQKNMKKTQEISKGKR--KEDSLTASQRK 37


>BC093880-1|AAH93880.1|  110|Homo sapiens small EDRK-rich factor 1A
           (telomeric) protein.
          Length = 110

 Score = 37.1 bits (82), Expect = 0.047
 Identities = 19/39 (48%), Positives = 25/39 (64%)
 Frame = +2

Query: 128 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERK 244
           M RGNQR+LAR KN KK  E+ K K   ++  L+  +RK
Sbjct: 1   MARGNQRELARQKNMKKTQEISKGKR--KEDSLTASQRK 37


>BC035932-1|AAH35932.1|  110|Homo sapiens small EDRK-rich factor 1A
           (telomeric) protein.
          Length = 110

 Score = 37.1 bits (82), Expect = 0.047
 Identities = 19/39 (48%), Positives = 25/39 (64%)
 Frame = +2

Query: 128 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERK 244
           M RGNQR+LAR KN KK  E+ K K   ++  L+  +RK
Sbjct: 1   MARGNQRELARQKNMKKTQEISKGKR--KEDSLTASQRK 37


>AF073519-1|AAC63518.1|  110|Homo sapiens small EDRK-rich factor 1,
           long isoform protein.
          Length = 110

 Score = 37.1 bits (82), Expect = 0.047
 Identities = 19/39 (48%), Positives = 25/39 (64%)
 Frame = +2

Query: 128 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERK 244
           M RGNQR+LAR KN KK  E+ K K   ++  L+  +RK
Sbjct: 1   MARGNQRELARQKNMKKTQEISKGKR--KEDSLTASQRK 37


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,816,330
Number of Sequences: 237096
Number of extensions: 891539
Number of successful extensions: 1841
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1836
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)