Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0800
         (597 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12990.1 68417.m02028 expressed protein                             28   4.1  
At5g12920.1 68418.m01482 expressed protein contains 3 weak WD-40...    27   9.5  

>At4g12990.1 68417.m02028 expressed protein 
          Length = 96

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 384 LKLSLFVKSENFYQVICC 437
           L L +FVKS NFY  +CC
Sbjct: 29  LHLKVFVKSRNFYIWLCC 46


>At5g12920.1 68418.m01482 expressed protein contains 3 weak WD-40
           repeats (PF00400); low similarity to MEK kinase alpha
           (GI:4028547); transcriptional repressor TUP1
           (GI:3406654) [Dictyostelium discoideum]; Eukaryotic
           translation initiation factor 3 subunit 2 (eIF-3 beta)
           (eIF3 p36) (TGF-beta receptor interacting protein 1)
           (TRIP-1) (SP:Q38884) [Arabidopsis thaliana]
          Length = 442

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 172 KETSRNAKKEKCQ*KDWFIPTRKKTQGC 255
           ++T RN K++KC  ++ F+   +   GC
Sbjct: 378 EDTQRNEKRDKCNHRNKFVSLSETVTGC 405


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,508,291
Number of Sequences: 28952
Number of extensions: 147746
Number of successful extensions: 299
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)