Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0791
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.05 |||splicing factor 3B|Schizosaccharomyces pombe|chr 2...    68   1e-12
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    25   6.2  
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote...    25   8.3  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    25   8.3  
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe...    25   8.3  

>SPBC211.05 |||splicing factor 3B|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 85

 Score = 67.7 bits (158), Expect = 1e-12
 Identities = 27/50 (54%), Positives = 38/50 (76%)
 Frame = +1

Query: 106 MGERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLL 255
           M +R    ++LE LQ++Y+G G+A TTKYEW++NQHRD+  S +GHP LL
Sbjct: 1   MADRLRSQAKLEQLQARYVGVGNAFTTKYEWMVNQHRDTLSSVVGHPPLL 50



 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +3

Query: 237 GSSGFVSYFAIVENESKARVKFNLMERMLQPCGPPP 344
           G    ++Y A    E + +V+ NL+E+M+ PCGPPP
Sbjct: 45  GHPPLLAYMATALGEPRVQVRKNLLEKMIMPCGPPP 80


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1297

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -1

Query: 434  YVMIRDSKSNNK*ISLILFLKSKRLIFRLFWRWAAWLKHSFHQIE 300
            Y  I D    N  +SL      K  +FR  WR A+W K S   ++
Sbjct: 985  YAEIDDRNPEN--VSLYHIALHKINVFRDLWRLASWHKESARTVK 1027


>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = -3

Query: 234 VTAARVAMLVHKPFIFCSVGVACAYIFAL*MFKLTVNVVSFTH 106
           +T   +A  ++ P  F   G  CA +FA  +  +   +   TH
Sbjct: 199 LTRLYLARFLNSPQYFIPYGTLCANVFATLLLSIMYMIPQITH 241


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 341 RWAAWLKHSFHQIEFYARFRFIFYD 267
           +W  W+ H+FH I+     RF+  D
Sbjct: 429 QWKTWISHTFH-IDPMGPSRFVLMD 452


>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = -3

Query: 234 VTAARVAMLVHKPFIFCSVGVACAYIFAL*MFKLTVNVVSFTH 106
           +T   +A  ++ P  F   G  CA +FA  +  +   +   TH
Sbjct: 199 LTRLYLARFLNSPQYFIPYGTLCANVFATLLLSIMYMIPQITH 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,191,418
Number of Sequences: 5004
Number of extensions: 40953
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)