Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0791
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0834 - 21626491-21626508,21626720-21626843,21626927-216270...    73   2e-13
02_02_0576 + 11730171-11730466,11733096-11733435,11733530-117337...    31   0.91 

>08_02_0834 -
           21626491-21626508,21626720-21626843,21626927-21627012,
           21627869-21627874
          Length = 77

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 29/48 (60%), Positives = 39/48 (81%)
 Frame = +1

Query: 112 ERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLL 255
           +R+NI+SQLEHLQ+KY+GTGHAD  ++EW +N  RDS  SY+GH  +L
Sbjct: 5   DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPML 52



 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 237 GSSGFVSYFAIVENESKARVKFNLMER 317
           G    ++YF+I ENES  R ++N M+R
Sbjct: 47  GHYPMLAYFSIAENESIGRERYNFMQR 73


>02_02_0576 +
           11730171-11730466,11733096-11733435,11733530-11733748,
           11734687-11734746,11734847-11735096,11735314-11735441
          Length = 430

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 310 IKLNFTRALDSFSTIAK*LTNPDDPCNCSKSRD 212
           + L    AL   +T+A  + NP++PC C  SRD
Sbjct: 176 VDLAGVEALADANTVAMVIVNPNNPCGCVYSRD 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,090,247
Number of Sequences: 37544
Number of extensions: 225604
Number of successful extensions: 403
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)