Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0791
         (590 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14342.1 68417.m02209 pre-mRNA splicing factor 10 kDa subunit...    73   1e-13
At3g23325.1 68416.m02942 splicing factor, putative similar to Sp...    73   1e-13
At2g02120.1 68415.m00148 plant defensin-fusion protein, putative...    27   7.1  

>At4g14342.1 68417.m02209 pre-mRNA splicing factor 10 kDa subunit,
           putative similar to Splicing factor 3B subunit 10
           (SF3b10) (Pre-mRNA splicing factor SF3b 10 kDa subunit)
           (Swiss-Prot:Q9BWJ5) [Homo sapiens]; Conserved in
           Plasmodium, yeast, fly, mouse, human
          Length = 87

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 29/48 (60%), Positives = 40/48 (83%)
 Frame = +1

Query: 112 ERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLL 255
           +R+NI+SQLEHLQ+KY+GTGHAD +++EW +N  RDS  SY+GH  +L
Sbjct: 5   DRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPML 52



 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 22/41 (53%), Positives = 29/41 (70%)
 Frame = +3

Query: 237 GSSGFVSYFAIVENESKARVKFNLMERMLQPCGPPPEKPED 359
           G    +SYFAI ENES  R ++N M++ML PCG PPE+ E+
Sbjct: 47  GHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREEE 87


>At3g23325.1 68416.m02942 splicing factor, putative similar to
           Splicing factor 3B subunit 10 (SF3b10) (Pre-mRNA
           splicing factor SF3b 10 kDa subunit) (Swiss-Prot:Q9BWJ5)
           [Homo sapiens]
          Length = 87

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 29/48 (60%), Positives = 40/48 (83%)
 Frame = +1

Query: 112 ERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLL 255
           +R+NI+SQLEHLQ+KY+GTGHAD +++EW +N  RDS  SY+GH  +L
Sbjct: 5   DRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPML 52



 Score = 51.2 bits (117), Expect = 5e-07
 Identities = 21/41 (51%), Positives = 29/41 (70%)
 Frame = +3

Query: 237 GSSGFVSYFAIVENESKARVKFNLMERMLQPCGPPPEKPED 359
           G    +SYFAI ENES  R ++N M++ML PCG PPE+ ++
Sbjct: 47  GHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE 87


>At2g02120.1 68415.m00148 plant defensin-fusion protein, putative
           (PDF2.1) plant defensin protein family member, personal
           communication, Bart Thomma
           (Bart.Thomma@agr.kuleuven.ac.be); contains a
           gamma-thionin family signature (PDOC00725)
          Length = 77

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -3

Query: 450 TNCSNLCHDKGF 415
           TNC N+CH++GF
Sbjct: 48  TNCENVCHNEGF 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,002,229
Number of Sequences: 28952
Number of extensions: 198056
Number of successful extensions: 348
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)