Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0788
(537 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr... 107 1e-24
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i... 100 1e-22
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr... 85 8e-18
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans... 83 2e-17
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans... 77 2e-15
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 66 3e-12
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 54 2e-08
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 52 7e-08
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 33 0.020
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo... 27 2.3
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 25 7.2
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 25 7.2
SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, An... 25 7.2
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|... 25 9.5
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 25 9.5
>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 107 bits (257), Expect = 1e-24
Identities = 48/68 (70%), Positives = 52/68 (76%)
Frame = +1
Query: 55 FFDVTVDDAPLGKIVIELRSDVTPKTCENXRALCTGEKGFGYKGSIFHRVIPNFMLQGGD 234
FFDV + PLG+IV +L DV PKT N RALCTGEKG+GY GS FHRVIP FMLQGGD
Sbjct: 5 FFDVIANGQPLGRIVFKLFDDVVPKTAANFRALCTGEKGYGYAGSTFHRVIPQFMLQGGD 64
Query: 235 FTNHNGTG 258
FT NGTG
Sbjct: 65 FTRGNGTG 72
Score = 93.5 bits (222), Expect = 2e-20
Identities = 42/58 (72%), Positives = 45/58 (77%)
Frame = +3
Query: 255 GGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTXGSQFFITTVKTXWLDGRHCCLWE 428
GGKSIYG KF DENF LKH PG+LSMANAG +T GSQFFITTV T WLDG+H E
Sbjct: 72 GGKSIYGEKFPDENFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPWLDGKHVVFGE 129
>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 100 bits (240), Expect = 1e-22
Identities = 47/79 (59%), Positives = 54/79 (68%)
Frame = +1
Query: 22 ANTGKMSLPRVFFDVTVDDAPLGKIVIELRSDVTPKTCENXRALCTGEKGFGYKGSIFHR 201
AN G V+FD+ D LG++ I L PKT EN RAL TGEKGFGY+GSIFHR
Sbjct: 19 ANRGPKVTDTVYFDLQQGDEFLGRVTIGLFGKTVPKTAENFRALATGEKGFGYEGSIFHR 78
Query: 202 VIPNFMLQGGDFTNHNGTG 258
VIPNFM+QGGD T +GTG
Sbjct: 79 VIPNFMIQGGDITKGDGTG 97
Score = 92.3 bits (219), Expect = 4e-20
Identities = 41/58 (70%), Positives = 45/58 (77%)
Frame = +3
Query: 255 GGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTXGSQFFITTVKTXWLDGRHCCLWE 428
GGKSIYG++F DENF L H PG+LSMANAG D+ GSQFFITTVKT WLDG H E
Sbjct: 97 GGKSIYGSRFPDENFKLSHQRPGLLSMANAGPDSNGSQFFITTVKTPWLDGHHVVFGE 154
>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 84.6 bits (200), Expect = 8e-18
Identities = 39/53 (73%), Positives = 43/53 (81%)
Frame = +3
Query: 255 GGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTXGSQFFITTVKTXWLDGRH 413
GG+SIYG KFEDENF LKH P +LSMANAG +T GSQFFITTV T LDG+H
Sbjct: 77 GGESIYGEKFEDENFELKHDKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKH 129
Score = 72.1 bits (169), Expect = 5e-14
Identities = 37/72 (51%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Frame = +1
Query: 55 FFDVTVDDAPLGKIVIELRSDVTPKTCENXRALCTGEKGFG----YKGSIFHRVIPNFML 222
+F +++D I EL +V PKT +N +LC G + G YKGS FHRVI NFML
Sbjct: 6 YFKISIDGKIQPTIYFELFDNVVPKTVKNFASLCNGFEKDGRCLTYKGSRFHRVIKNFML 65
Query: 223 QGGDFTNHNGTG 258
QGGDFT NGTG
Sbjct: 66 QGGDFTRGNGTG 77
>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 83.4 bits (197), Expect = 2e-17
Identities = 40/79 (50%), Positives = 49/79 (62%), Gaps = 6/79 (7%)
Frame = +1
Query: 46 PRVFFDVTVDDAPLGKIVIELRSDVTPKTCENXRALCTGE------KGFGYKGSIFHRVI 207
P VF D+ +D LG+I I L S + PKT EN R CTGE K GYK S FHR+I
Sbjct: 5 PVVFMDIAIDGRLLGRIKIRLFSSIVPKTAENFRQFCTGETLGVNQKPIGYKNSTFHRII 64
Query: 208 PNFMLQGGDFTNHNGTGES 264
FM+QGGDF + +GTG +
Sbjct: 65 QGFMIQGGDFVSGDGTGSA 83
Score = 72.1 bits (169), Expect = 5e-14
Identities = 34/59 (57%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
Frame = +3
Query: 255 GGKSIYGNK-FEDENFTLKHTGPGVLSMANAGADTXGSQFFITTVKTXWLDGRHCCLWE 428
G +I+ ++ F DENFTLKH PG+LSMANAG D+ G QFFITTV +LDG+H E
Sbjct: 81 GSATIFNSRTFPDENFTLKHDRPGLLSMANAGKDSNGCQFFITTVPCDFLDGKHVVFGE 139
>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 76.6 bits (180), Expect = 2e-15
Identities = 35/54 (64%), Positives = 41/54 (75%), Gaps = 1/54 (1%)
Frame = +3
Query: 255 GGKSIYGNKFEDE-NFTLKHTGPGVLSMANAGADTXGSQFFITTVKTXWLDGRH 413
GG SIYG+KF+DE + L HTG G+LSMANAG +T SQFFIT T WLDG+H
Sbjct: 63 GGTSIYGDKFDDEIHSDLHHTGAGILSMANAGPNTNSSQFFITLAPTPWLDGKH 116
Score = 59.7 bits (138), Expect = 3e-10
Identities = 31/60 (51%), Positives = 41/60 (68%)
Frame = +1
Query: 85 LGKIVIELRSDVTPKTCENXRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGES 264
LGKI+IEL ++ PKTC+N L ++G+ Y G IFHRVIP+F++QGGD T G S
Sbjct: 10 LGKILIELYTEHAPKTCQNFYTLA--KEGY-YDGVIFHRVIPDFVIQGGDPTGTGRGGTS 66
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 66.1 bits (154), Expect = 3e-12
Identities = 32/54 (59%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Frame = +3
Query: 255 GGKSIYGNKFEDE-NFTLKHTGPGVLSMANAGADTXGSQFFITTVKTXWLDGRH 413
GG+SI+ FEDE + LKH P +SMAN+G +T GSQFFITT T WLDG+H
Sbjct: 516 GGESIWKKDFEDEISPNLKHDRPFTVSMANSGPNTNGSQFFITTDLTPWLDGKH 569
Score = 45.2 bits (102), Expect = 6e-06
Identities = 28/72 (38%), Positives = 37/72 (51%)
Frame = +1
Query: 88 GKIVIELRSDVTPKTCENXRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGESP 267
G I I+L + PK +N E G+ Y +IFHR+I NFM+QGGD +GTG
Sbjct: 464 GDISIKLYPEEAPKAVQNFTT--HAENGY-YDNTIFHRIIKNFMIQGGDPLG-DGTGGES 519
Query: 268 STAISLKTRISP 303
+ ISP
Sbjct: 520 IWKKDFEDEISP 531
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 53.6 bits (123), Expect = 2e-08
Identities = 27/54 (50%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = +3
Query: 255 GGKSIYGNKFEDENFT-LKHTGPGVLSMANAGADTXGSQFFITTVKTXWLDGRH 413
GG+SI+G F+DE LKH G++SMAN G +T GSQFFI LD +H
Sbjct: 337 GGQSIWGKPFKDEFCNPLKHDDRGIISMANRGKNTNGSQFFILYGPAKHLDNKH 390
Score = 41.9 bits (94), Expect = 6e-05
Identities = 24/59 (40%), Positives = 34/59 (57%)
Frame = +1
Query: 88 GKIVIELRSDVTPKTCENXRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGES 264
G+I IEL +D P N L ++G+ Y+ +IFHR I FM+QGGD + G+S
Sbjct: 285 GEINIELHTDYAPHAVYNFVQLA--KQGY-YRNTIFHRNIARFMIQGGDPSGTGRGGQS 340
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 51.6 bits (118), Expect = 7e-08
Identities = 28/59 (47%), Positives = 34/59 (57%)
Frame = +1
Query: 88 GKIVIELRSDVTPKTCENXRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGES 264
G I IEL PK C N LC +G+ Y G+I HRV+P F++QGGD T GES
Sbjct: 22 GDIQIELWCKEVPKACRNFIQLCL--EGY-YDGTIVHRVVPEFLIQGGDPTGTGMGGES 77
Score = 31.9 bits (69), Expect = 0.062
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 255 GGKSIYGNKFEDENFT-LKHTGPGVLSMANAGADTXGSQFFITTVKTXWLDGR 410
GG+SIYG F E L+ G++ MA + SQFFIT T +G+
Sbjct: 74 GGESIYGEPFAVETHPRLRFIRRGLVGMACTENEGNNSQFFITLGPTPEWNGK 126
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 33.5 bits (73), Expect = 0.020
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = +1
Query: 76 DAPLGKIVIELRSDVTPKTCENXRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGT 255
+ +G +VI+L PKTCEN LC K Y F+ + N+ Q GD G
Sbjct: 6 ETTVGDLVIDLFVKEAPKTCENFLKLC---KLKYYNFCPFYNIQHNYTCQTGDPLGPTGD 62
Query: 256 G 258
G
Sbjct: 63 G 63
>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 64 VTVDDAPLGKIVIELRSDVTPKTCENXRALCT 159
V D+ P+GKI+I R D+ N C+
Sbjct: 19 VATDNIPIGKIIIRKRVDILSLDSANLTRTCS 50
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 25.0 bits (52), Expect = 7.2
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = -1
Query: 333 WRGRQVQCA*G*NSRLQTYCRRW---TFPRAVMVGEVPSLQHEIGDDTME 193
WRG + + ++ LQ +R TFP A VG+V +L ++ D + E
Sbjct: 120 WRGSESKHTGDFSTMLQDILQRRAYRTFPGAFTVGDVNALLDQLADASSE 169
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 25.0 bits (52), Expect = 7.2
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 9/54 (16%)
Frame = -2
Query: 185 PL*PKPFSPVH---RAR-----KFSHVL-GVTSLLSSITIFPSGASSTVTSKNT 51
P PKP +PV+ R + S+VL +TS SS+T PS + +T+ S T
Sbjct: 312 PSPPKPNNPVYLPPRGNPTVNDRVSNVLPSITSFDSSVTTVPSNSPATLNSYTT 365
>SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, Anp
family |Schizosaccharomyces pombe|chr 2|||Manual
Length = 430
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +3
Query: 162 RERLRLQGLHFPSCHPQFHAARRGLHQP*RHGGKSIYG 275
+ ++ L+G FP+ + HA G + + G S+YG
Sbjct: 326 KAKVHLEGCEFPAFSFEKHAETEGFGKMAKRMGFSVYG 363
>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 348
Score = 24.6 bits (51), Expect = 9.5
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = +2
Query: 26 IPAKCLYHEYSSTSLLTMPHW 88
+P +C+Y ++T L+ PH+
Sbjct: 128 LPGECIYGHKATTFLINAPHY 148
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -1
Query: 288 LQTYCRRWTFPRAVMVGEVPSLQHE 214
+Q +C R V +G +PS HE
Sbjct: 288 IQNFCSNTAASRNVFIGNLPSSYHE 312
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,039,017
Number of Sequences: 5004
Number of extensions: 41141
Number of successful extensions: 165
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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