Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0788
(537 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 119 2e-27
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.) 113 1e-25
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.) 95 4e-20
SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.) 91 7e-19
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19) 69 2e-12
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24) 62 2e-10
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23) 56 2e-08
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 56 2e-08
SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 6e-08
SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05) 51 5e-07
SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11) 50 2e-06
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 3e-05
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06) 34 0.064
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.11
SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035) 31 0.60
SB_48113| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_24028| Best HMM Match : DNA_photolyase (HMM E-Value=1.3e-39) 28 4.2
SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56) 27 7.3
SB_43146| Best HMM Match : Ank (HMM E-Value=0) 27 7.3
SB_15696| Best HMM Match : DUF282 (HMM E-Value=2.5) 27 7.3
SB_58335| Best HMM Match : SMC_N (HMM E-Value=0.023) 27 9.7
SB_43957| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.6e-13) 27 9.7
SB_26973| Best HMM Match : DUF471 (HMM E-Value=1.1) 27 9.7
SB_17062| Best HMM Match : Baculo_LEF-2 (HMM E-Value=1.3) 27 9.7
SB_1649| Best HMM Match : ANF_receptor (HMM E-Value=1.2e-05) 27 9.7
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 119 bits (286), Expect = 2e-27
Identities = 51/71 (71%), Positives = 57/71 (80%)
Frame = +1
Query: 46 PRVFFDVTVDDAPLGKIVIELRSDVTPKTCENXRALCTGEKGFGYKGSIFHRVIPNFMLQ 225
PRVFFD+T+ + G+IV+ELRSDV P T EN R LCT EKGFGYKGS FHR+IP FM Q
Sbjct: 137 PRVFFDITIGERSAGRIVMELRSDVVPMTAENFRCLCTHEKGFGYKGSSFHRIIPQFMCQ 196
Query: 226 GGDFTNHNGTG 258
GGDFT HNGTG
Sbjct: 197 GGDFTKHNGTG 207
Score = 97.1 bits (231), Expect = 8e-21
Identities = 47/78 (60%), Positives = 53/78 (67%)
Frame = +3
Query: 180 QGLHFPSCHPQFHAARRGLHQP*RHGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTX 359
+G F PQF + GGKSIYG KFEDENF LKHTG GVLSMAN+G +T
Sbjct: 182 KGSSFHRIIPQFMCQGGDFTKHNGTGGKSIYGAKFEDENFVLKHTGAGVLSMANSGPNTN 241
Query: 360 GSQFFITTVKTXWLDGRH 413
GSQFF+TT KT WLDG+H
Sbjct: 242 GSQFFLTTEKTDWLDGKH 259
>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 235
Score = 113 bits (271), Expect = 1e-25
Identities = 49/68 (72%), Positives = 55/68 (80%)
Frame = +1
Query: 55 FFDVTVDDAPLGKIVIELRSDVTPKTCENXRALCTGEKGFGYKGSIFHRVIPNFMLQGGD 234
+FD+ + AP G+IV+ELR DV PKT EN RALCTGEKGFGYKGS FHRVIP FM QGGD
Sbjct: 6 YFDIEIGGAPAGRIVMELRDDVVPKTAENFRALCTGEKGFGYKGSSFHRVIPGFMCQGGD 65
Query: 235 FTNHNGTG 258
FT +GTG
Sbjct: 66 FTRGDGTG 73
Score = 95.5 bits (227), Expect = 2e-20
Identities = 41/53 (77%), Positives = 44/53 (83%)
Frame = +3
Query: 255 GGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTXGSQFFITTVKTXWLDGRH 413
GGKSIYG KF DENF LKHTGPG+LSMANAG T GSQFF+ T KT WLDG+H
Sbjct: 73 GGKSIYGAKFADENFNLKHTGPGILSMANAGPGTNGSQFFLCTAKTSWLDGKH 125
>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 94.7 bits (225), Expect = 4e-20
Identities = 43/53 (81%), Positives = 44/53 (83%)
Frame = +3
Query: 255 GGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTXGSQFFITTVKTXWLDGRH 413
GGKSIYG KF DENF L+H G G LSMANAG DT GSQFFITTVKT WLDGRH
Sbjct: 115 GGKSIYGQKFADENFKLQHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRH 167
Score = 58.8 bits (136), Expect = 3e-09
Identities = 26/37 (70%), Positives = 30/37 (81%), Gaps = 2/37 (5%)
Frame = +1
Query: 154 CT--GEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTG 258
CT +KGFGYK SIFHRVI +FM+QGGDFT +GTG
Sbjct: 79 CTIESQKGFGYKNSIFHRVIQDFMIQGGDFTKGDGTG 115
>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 90.6 bits (215), Expect = 7e-19
Identities = 39/55 (70%), Positives = 43/55 (78%)
Frame = +3
Query: 255 GGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTXGSQFFITTVKTXWLDGRHCC 419
GG SIYG F+DENF LKH GPG L MANAG +T GSQF+ITT+KT WLDG H C
Sbjct: 96 GGYSIYGKYFDDENFNLKHYGPGWLCMANAGKNTNGSQFYITTIKTSWLDGSHTC 150
Score = 89.4 bits (212), Expect = 2e-18
Identities = 39/70 (55%), Positives = 50/70 (71%)
Frame = +1
Query: 49 RVFFDVTVDDAPLGKIVIELRSDVTPKTCENXRALCTGEKGFGYKGSIFHRVIPNFMLQG 228
+V+ DV++ P G++++ L D PKT N AL E+GFGYK SIFHRVI NFM+QG
Sbjct: 27 KVWMDVSIGGQPAGRVILGLFGDTAPKTVANFVALADKEQGFGYKDSIFHRVIKNFMIQG 86
Query: 229 GDFTNHNGTG 258
GDFTN +GTG
Sbjct: 87 GDFTNKDGTG 96
>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
Length = 99
Score = 69.3 bits (162), Expect = 2e-12
Identities = 32/54 (59%), Positives = 40/54 (74%), Gaps = 1/54 (1%)
Frame = +3
Query: 255 GGKSIYGNKFEDE-NFTLKHTGPGVLSMANAGADTXGSQFFITTVKTXWLDGRH 413
GG+SI+G +FEDE + L+H P +SMANAG +T GSQFFIT V T WLD +H
Sbjct: 5 GGESIWGGEFEDEFHRNLRHDRPYTVSMANAGPNTNGSQFFITVVPTPWLDNKH 58
>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
Length = 145
Score = 62.5 bits (145), Expect = 2e-10
Identities = 26/53 (49%), Positives = 36/53 (67%)
Frame = +3
Query: 255 GGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTXGSQFFITTVKTXWLDGRH 413
GG+S+YG FEDE+F++ H GV+ MAN G T GSQF+IT W+D ++
Sbjct: 48 GGESVYGPLFEDEDFSVAHNRRGVVGMANKGRHTNGSQFYITLQPAPWMDTKY 100
>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
Length = 378
Score = 56.0 bits (129), Expect = 2e-08
Identities = 27/44 (61%), Positives = 30/44 (68%)
Frame = +3
Query: 255 GGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTXGSQFFITTV 386
GG+SIYG F DE F KH P +LSMAN G +T GSQFFI V
Sbjct: 28 GGESIYGGTFGDECFEFKHERPMLLSMANRGPNTNGSQFFIIHV 71
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 56.0 bits (129), Expect = 2e-08
Identities = 25/36 (69%), Positives = 29/36 (80%)
Frame = +3
Query: 306 KHTGPGVLSMANAGADTXGSQFFITTVKTXWLDGRH 413
+H PG+LSMAN+G +T GSQFFITTV T LDGRH
Sbjct: 188 EHDKPGLLSMANSGPNTNGSQFFITTVPTPHLDGRH 223
>SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 54.4 bits (125), Expect = 6e-08
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = +3
Query: 333 MANAGADTXGSQFFITTVKTXWLDGRH 413
MANAG DT GSQFFITTVKT WLDG+H
Sbjct: 1 MANAGKDTNGSQFFITTVKTSWLDGKH 27
>SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)
Length = 49
Score = 51.2 bits (117), Expect = 5e-07
Identities = 21/30 (70%), Positives = 24/30 (80%)
Frame = +3
Query: 324 VLSMANAGADTXGSQFFITTVKTXWLDGRH 413
+LSMANAG T GSQFF+ T KT WLDG+H
Sbjct: 2 ILSMANAGPGTNGSQFFLCTAKTSWLDGKH 31
>SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)
Length = 48
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/46 (54%), Positives = 29/46 (63%), Gaps = 8/46 (17%)
Frame = +1
Query: 88 GKIVIELRSDVTPKTCENXRALCTGEKGFG--------YKGSIFHR 201
G+++ EL +D PKT EN RALCTGEKG G YKG FHR
Sbjct: 2 GRVLFELFADKVPKTAENFRALCTGEKGIGPSTGKPLHYKGCPFHR 47
>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 45.2 bits (102), Expect = 3e-05
Identities = 25/51 (49%), Positives = 32/51 (62%)
Frame = +1
Query: 85 LGKIVIELRSDVTPKTCENXRALCTGEKGFGYKGSIFHRVIPNFMLQGGDF 237
LG+I IEL +D P + N A + G+ Y G+ FHRVIP FM+QGG F
Sbjct: 32 LGEIEIELDADKAPISTANFLAYV--DSGY-YAGTQFHRVIPGFMVQGGGF 79
>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
Length = 454
Score = 34.3 bits (75), Expect = 0.064
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +1
Query: 85 LGKIVIELRSDVTPKTCENXRALCTGEKGFGYKGSIFHRVI 207
+G I IEL TPK C N LC +G+ Y +IFHR++
Sbjct: 12 VGDIDIELWGKETPKACRNFIQLCL--EGY-YDNTIFHRIV 49
>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1651
Score = 33.5 bits (73), Expect = 0.11
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +3
Query: 309 HTGPGVLSMANAGADTXGSQFFITTVKTXWLDGRH 413
H G +SMAN G ++ GSQFFI K LD ++
Sbjct: 301 HNARGTVSMANNGPNSNGSQFFICYGKQPHLDMKY 335
>SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035)
Length = 885
Score = 31.1 bits (67), Expect = 0.60
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +1
Query: 79 APLGKIVIELRSDVTPKTCENXRALCTG 162
AP I+I L S V+PKT E+ R LC G
Sbjct: 569 APKIDIIIALDSGVSPKTFEDERQLCAG 596
>SB_48113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 466
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 198 SCHPQFHAARRGLHQP*RHGGKSIYGNKFEDE 293
S HP H RG + P R +SI KF+DE
Sbjct: 8 SQHPMEHLESRGHNTPRRSSSRSIKRKKFDDE 39
>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2014
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -2
Query: 158 VHRARKFSHVLGV--TSLLSSITIFPSGASSTVTSKNTRGRDILPV 27
+ + KF+H+ G+ TS T+F +T T TR RD++ +
Sbjct: 168 IQQLHKFTHIHGMLSTSSRGRYTLFRGQYDTTATQIYTRSRDVIDI 213
>SB_24028| Best HMM Match : DNA_photolyase (HMM E-Value=1.3e-39)
Length = 432
Score = 28.3 bits (60), Expect = 4.2
Identities = 21/86 (24%), Positives = 35/86 (40%)
Frame = +2
Query: 5 CKLLTLLIPAKCLYHEYSSTSLLTMPHWEKLLLS*EVTSLPRRVKTXVPCALARKASVTR 184
C+L L C S +L T E LS V+ + + T V C L ++
Sbjct: 333 CQLKALSTTVSC-----QSKALSTTVSCELKALSTTVSCELKALSTTVSCQLKALSTTVS 387
Query: 185 APFSIVSSPISCCKEGTSPTITARGK 262
+S+ +SC + S T++ + K
Sbjct: 388 CELKALSTTVSCQSKALSTTVSCQSK 413
>SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)
Length = 1566
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 113 VTSLPRRVKTXVPCALARKASVTRAPFSIVSSPIS 217
VT LP VK + + ASVT P S+ P+S
Sbjct: 1224 VTQLPVSVKHLLTSVMHLHASVTHLPASVTQLPVS 1258
>SB_43146| Best HMM Match : Ank (HMM E-Value=0)
Length = 282
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 203 TRWKMEPL*PKPFSPVHRARKFSHVLGVTSLL 108
TR+ +EP K F+P+H A ++ HV V LL
Sbjct: 3 TRYPIEPA--KGFTPLHEAARYGHVHIVKLLL 32
>SB_15696| Best HMM Match : DUF282 (HMM E-Value=2.5)
Length = 128
Score = 27.5 bits (58), Expect = 7.3
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 149 PCALARKASVTRAPFSIVSSPISCCKE-GTSPTITA 253
PCALA SV+ P S VSS + G S TI+A
Sbjct: 48 PCALATAPSVSEVPASTVSSSSPLRRSPGPSGTISA 83
>SB_58335| Best HMM Match : SMC_N (HMM E-Value=0.023)
Length = 354
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 365 PVLHHHCQDLLAGWQTLLSLG 427
PVLHH +DL A QT+ +G
Sbjct: 324 PVLHHDGRDLAAALQTIREIG 344
>SB_43957| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.6e-13)
Length = 560
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/52 (23%), Positives = 20/52 (38%)
Frame = -1
Query: 201 TMENGALVTEAFLASAQGTXVFTRLGSDVTSQLNNNFSQWGIVNSDVEEYSW 46
T + L F S RLG + ++L F W +++ E +W
Sbjct: 95 TKDKAVLKALHFYDSCMDKAEIERLGGEPLTKLIKEFGSWAVIDKSWNETNW 146
>SB_26973| Best HMM Match : DUF471 (HMM E-Value=1.1)
Length = 674
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 164 RKASVTRAPFSIVSSPISCCKEGTSPTITARG 259
+K R S V SC +EG SPT T+RG
Sbjct: 276 KKPFSNREAHSCVELCRSCVREGCSPTPTSRG 307
>SB_17062| Best HMM Match : Baculo_LEF-2 (HMM E-Value=1.3)
Length = 221
Score = 27.1 bits (57), Expect = 9.7
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -3
Query: 427 SQRQQCLPSSQXVLTVVMKNWEPL 356
SQR++C P VL + ++ W P+
Sbjct: 198 SQREKCTPGMDIVLDIPVQEWLPI 221
>SB_1649| Best HMM Match : ANF_receptor (HMM E-Value=1.2e-05)
Length = 481
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = -2
Query: 167 FSPVHRARKFSHVLGVTSLLSSITIFPSGASSTVTSKNTRGRDILPVL 24
+SPVH K + + V + I + + +S+ RG ++L V+
Sbjct: 321 YSPVHNVEKSKNAITVLDTMKKIKVVGTTGQIHFSSEGERGGEMLDVM 368
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,737,839
Number of Sequences: 59808
Number of extensions: 336158
Number of successful extensions: 786
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -