Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0784
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...    79   4e-16
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...    79   4e-16
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    26   3.5  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    26   4.7  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    25   8.2  

>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score = 79.4 bits (187), Expect = 4e-16
 Identities = 41/81 (50%), Positives = 54/81 (66%)
 Frame = +2

Query: 185 VQVSDMSLQDYISVKEKYXXIFTYSAGXYAHKRFRKAQCPIVXRLTNSLMMHGXNTGKXL 364
           V+V D+SL DYI++         ++AG +  KRFRKA+C IV RLTNSLMM+G N GK L
Sbjct: 29  VEVKDISLVDYITIGNGQP--LPHTAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKL 86

Query: 365 MAVXXVKHAFEMYSLXNWRKP 427
           +A   VKHAFE+ +L   + P
Sbjct: 87  LATRIVKHAFEIIALLTDQNP 107



 Score = 31.9 bits (69), Expect = 0.071
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = +3

Query: 402 IHLXTGENPXXVLVTAIINSGPREDS 479
           I L T +NP  VLV A+   GPREDS
Sbjct: 99  IALLTDQNPLQVLVDAVAACGPREDS 124


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 79.4 bits (187), Expect = 4e-16
 Identities = 41/81 (50%), Positives = 54/81 (66%)
 Frame = +2

Query: 185 VQVSDMSLQDYISVKEKYXXIFTYSAGXYAHKRFRKAQCPIVXRLTNSLMMHGXNTGKXL 364
           V+V D+SL DYI++         ++AG +  KRFRKA+C IV RLTNSLMM+G N GK L
Sbjct: 29  VEVKDISLVDYITIGNGQP--LPHTAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKL 86

Query: 365 MAVXXVKHAFEMYSLXNWRKP 427
           +A   VKHAFE+ +L   + P
Sbjct: 87  LATRIVKHAFEIIALLTDQNP 107



 Score = 31.9 bits (69), Expect = 0.071
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = +3

Query: 402 IHLXTGENPXXVLVTAIINSGPREDS 479
           I L T +NP  VLV A+   GPREDS
Sbjct: 99  IALLTDQNPLQVLVDAVAACGPREDS 124


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 211 LQRHIRDLHISSNSIC 164
           LQ HIR+ H+ S SIC
Sbjct: 194 LQNHIREAHVPSCSIC 209


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
 Frame = -1

Query: 276 CAYXPAE*VNIXXYFSL-TEM*SCRDISE---TCTSVATPSAEKLDFRNVGGLW*RHGFH 109
           C +   +  ++  Y  + T++ SC  +     TC  +   S   L   +VG LW  HG  
Sbjct: 8   CQHLKLKPADVENYQKICTQIFSCHFVPRRCSTCKRINKRSIRCLSCHSVGCLWGHHGEE 67

Query: 108 NHAACLGYVVIPVLLGHDWYF 46
           +       + + V  GH + F
Sbjct: 68  HAMEHTHMIGVDVKNGHTYCF 88


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +2

Query: 119 CLYHKPPTFLKSSFS 163
           C  H P TFL SSFS
Sbjct: 117 CFIHPPITFLSSSFS 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,068,660
Number of Sequences: 5004
Number of extensions: 35049
Number of successful extensions: 82
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)