Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0784
         (588 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300...    97   9e-21
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419           97   1e-20
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57...    30   1.6  

>11_04_0317 -
           16328558-16328612,16328698-16328901,16329794-16330065,
           16330152-16330220
          Length = 199

 Score = 97.1 bits (231), Expect = 9e-21
 Identities = 48/83 (57%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
 Frame = +2

Query: 182 DVQVSDMSLQDYISVKE-KYXXIFTYSAGXYAHKRFRKAQCPIVXRLTNSLMMHGXNTGK 358
           DVQV+D+SL DY++V   K+     ++AG Y+ KRFRKAQCPIV RLTNSLMMHG N GK
Sbjct: 21  DVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGK 80

Query: 359 XLMAVXXVKHAFEMYSLXNWRKP 427
            +MAV  VKHA E+  L     P
Sbjct: 81  KIMAVRIVKHAMEIIHLLTDANP 103



 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 18/29 (62%), Positives = 22/29 (75%)
 Frame = +3

Query: 393 LKCIHLXTGENPXXVLVTAIINSGPREDS 479
           ++ IHL T  NP  V+V AIINSGPRED+
Sbjct: 92  MEIIHLLTDANPIQVIVDAIINSGPREDA 120


>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
          Length = 200

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 47/83 (56%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
 Frame = +2

Query: 182 DVQVSDMSLQDYISVKE-KYXXIFTYSAGXYAHKRFRKAQCPIVXRLTNSLMMHGXNTGK 358
           DVQV+D+SL DY++V   K+     ++AG Y+ KRFRKAQCP+V RLTNSLMMHG N GK
Sbjct: 22  DVQVNDISLADYLAVSSTKHATYLPHTAGRYSAKRFRKAQCPLVERLTNSLMMHGRNNGK 81

Query: 359 XLMAVXXVKHAFEMYSLXNWRKP 427
            +MAV  VKHA E+  L     P
Sbjct: 82  KIMAVRIVKHAMEIIHLLTDANP 104



 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 18/29 (62%), Positives = 22/29 (75%)
 Frame = +3

Query: 393 LKCIHLXTGENPXXVLVTAIINSGPREDS 479
           ++ IHL T  NP  V+V AIINSGPRED+
Sbjct: 93  MEIIHLLTDANPIQVIVDAIINSGPREDA 121


>07_01_0077 +
           566895-567127,567207-567331,571204-571340,571437-571542,
           571635-571885,572018-572128,572209-572320,572626-572716,
           573168-573507,573678-573900,573946-574204,574274-574481,
           574572-574622,574712-574870,574956-575120,575322-575399,
           575732-576031,576107-576259,576871-576918,577019-577188,
           577738-577852,578462-578623,578789-578893,578969-579199,
           579277-579410,579484-579738,579822-580110,580214-580306,
           580395-580520,580646-580897
          Length = 1693

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 83  TXPRQAAWLWKPCLYHKPPTF 145
           T P Q +WLW+  L H P  F
Sbjct: 88  TDPSQCSWLWREVLKHNPDAF 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,676,065
Number of Sequences: 37544
Number of extensions: 236648
Number of successful extensions: 442
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)