Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0784
         (588 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)               110   7e-25
SB_23893| Best HMM Match : rve (HMM E-Value=3.1e-24)                   29   2.1  
SB_3269| Best HMM Match : 5_nucleotid (HMM E-Value=0)                  28   6.5  

>SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)
          Length = 272

 Score =  110 bits (265), Expect = 7e-25
 Identities = 51/82 (62%), Positives = 60/82 (73%)
 Frame = +2

Query: 182 DVQVSDMSLQDYISVKEKYXXIFTYSAGXYAHKRFRKAQCPIVXRLTNSLMMHGXNTGKX 361
           DVQVSD+SL DYI+VKEKY     ++AG YA KRFRKAQCPIV R+TNS+MMHG N GK 
Sbjct: 95  DVQVSDISLTDYIAVKEKYSTYLPHTAGRYAAKRFRKAQCPIVERITNSMMMHGRNNGKK 154

Query: 362 LMAVXXVKHAFEMYSLXNWRKP 427
           LM V  +KH+FE+  L     P
Sbjct: 155 LMTVRIIKHSFEIIHLLTGENP 176



 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 22/26 (84%), Positives = 22/26 (84%)
 Frame = +3

Query: 402 IHLXTGENPXXVLVTAIINSGPREDS 479
           IHL TGENP  VLV AIINSGPREDS
Sbjct: 168 IHLLTGENPLQVLVNAIINSGPREDS 193



 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 103 VVVETMSLPQAADIPEIKLFGRWS 174
           VV +  +   A ++P+IKLFG+WS
Sbjct: 6   VVDDDAAAVVAPEVPDIKLFGKWS 29



 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 103 VVVETMSLPQAADIPEIKLFGRWS 174
           VV +  +   A ++P+IKLFG+WS
Sbjct: 69  VVDDDAAAVVAPEVPDIKLFGKWS 92


>SB_23893| Best HMM Match : rve (HMM E-Value=3.1e-24)
          Length = 553

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +2

Query: 8   RTVRGYNFYLVIEKYQSWPR--RTGMTTXPR 94
           ++V G NF++V++ +  WP    T  TT P+
Sbjct: 241 QSVHGVNFFVVVDAHSKWPEIIATSSTTAPK 271


>SB_3269| Best HMM Match : 5_nucleotid (HMM E-Value=0)
          Length = 403

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +2

Query: 143 FLKSSFSADGVATDVQVSDMSLQDYISVKEKYXXIFTYSAGXYAH 277
           F K  FS DG+ +  ++ D+ ++   S++E Y        G +A+
Sbjct: 26  FQKRFFSRDGIRSVQEIKDVYIERKHSIEENYEHTVVQDQGIFAN 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,999,288
Number of Sequences: 59808
Number of extensions: 279197
Number of successful extensions: 518
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)