Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0784
(588 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC018151-1|AAH18151.1| 204|Homo sapiens ribosomal protein S5 pr... 116 8e-26
BC015405-1|AAH15405.1| 204|Homo sapiens ribosomal protein S5 pr... 116 8e-26
AK223106-1|BAD96826.1| 204|Homo sapiens ribosomal protein S5 va... 116 8e-26
AB061853-1|BAB79493.1| 204|Homo sapiens ribosomal protein S5 pr... 116 8e-26
U14970-1|AAA85658.1| 204|Homo sapiens ribosomal protein S5 prot... 111 2e-24
AB209803-1|BAD93040.1| 107|Homo sapiens ribosomal protein S5 va... 62 2e-09
AB231860-1|BAE19678.1| 1640|Homo sapiens hypothetical protein pr... 34 0.32
AL513320-1|CAI14334.1| 1229|Homo sapiens multiple EGF-like-domai... 31 3.0
AL512413-3|CAH70834.1| 1229|Homo sapiens multiple EGF-like-domai... 31 3.0
AB011539-1|BAA32467.2| 1246|Homo sapiens MEGF6 protein. 31 3.0
>BC018151-1|AAH18151.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 116 bits (278), Expect = 8e-26
Identities = 59/104 (56%), Positives = 68/104 (65%)
Frame = +2
Query: 116 PCLYHKPPTFLKSSFSADGVATDVQVSDMSLQDYISVKEKYXXIFTYSAGXYAHKRFRKA 295
P + P L +S D DVQ++D+SLQDYI+VKEKY +SAG YA KRFRKA
Sbjct: 9 PAVAETPDIKLFGKWSTD----DVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKA 64
Query: 296 QCPIVXRLTNSLMMHGXNTGKXLMAVXXVKHAFEMYSLXNWRKP 427
QCPIV RLTNS+MMHG N GK LM V VKHAFE+ L P
Sbjct: 65 QCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENP 108
Score = 48.0 bits (109), Expect = 2e-05
Identities = 22/26 (84%), Positives = 22/26 (84%)
Frame = +3
Query: 402 IHLXTGENPXXVLVTAIINSGPREDS 479
IHL TGENP VLV AIINSGPREDS
Sbjct: 100 IHLLTGENPLQVLVNAIINSGPREDS 125
>BC015405-1|AAH15405.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 116 bits (278), Expect = 8e-26
Identities = 59/104 (56%), Positives = 68/104 (65%)
Frame = +2
Query: 116 PCLYHKPPTFLKSSFSADGVATDVQVSDMSLQDYISVKEKYXXIFTYSAGXYAHKRFRKA 295
P + P L +S D DVQ++D+SLQDYI+VKEKY +SAG YA KRFRKA
Sbjct: 9 PAVAETPDIKLFGKWSTD----DVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKA 64
Query: 296 QCPIVXRLTNSLMMHGXNTGKXLMAVXXVKHAFEMYSLXNWRKP 427
QCPIV RLTNS+MMHG N GK LM V VKHAFE+ L P
Sbjct: 65 QCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENP 108
Score = 48.0 bits (109), Expect = 2e-05
Identities = 22/26 (84%), Positives = 22/26 (84%)
Frame = +3
Query: 402 IHLXTGENPXXVLVTAIINSGPREDS 479
IHL TGENP VLV AIINSGPREDS
Sbjct: 100 IHLLTGENPLQVLVNAIINSGPREDS 125
>AK223106-1|BAD96826.1| 204|Homo sapiens ribosomal protein S5
variant protein.
Length = 204
Score = 116 bits (278), Expect = 8e-26
Identities = 59/104 (56%), Positives = 68/104 (65%)
Frame = +2
Query: 116 PCLYHKPPTFLKSSFSADGVATDVQVSDMSLQDYISVKEKYXXIFTYSAGXYAHKRFRKA 295
P + P L +S D DVQ++D+SLQDYI+VKEKY +SAG YA KRFRKA
Sbjct: 9 PAVAETPDIKLFGKWSTD----DVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKA 64
Query: 296 QCPIVXRLTNSLMMHGXNTGKXLMAVXXVKHAFEMYSLXNWRKP 427
QCPIV RLTNS+MMHG N GK LM V VKHAFE+ L P
Sbjct: 65 QCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENP 108
Score = 48.0 bits (109), Expect = 2e-05
Identities = 22/26 (84%), Positives = 22/26 (84%)
Frame = +3
Query: 402 IHLXTGENPXXVLVTAIINSGPREDS 479
IHL TGENP VLV AIINSGPREDS
Sbjct: 100 IHLLTGENPLQVLVNAIINSGPREDS 125
>AB061853-1|BAB79493.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 116 bits (278), Expect = 8e-26
Identities = 59/104 (56%), Positives = 68/104 (65%)
Frame = +2
Query: 116 PCLYHKPPTFLKSSFSADGVATDVQVSDMSLQDYISVKEKYXXIFTYSAGXYAHKRFRKA 295
P + P L +S D DVQ++D+SLQDYI+VKEKY +SAG YA KRFRKA
Sbjct: 9 PAVAETPDIKLFGKWSTD----DVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKA 64
Query: 296 QCPIVXRLTNSLMMHGXNTGKXLMAVXXVKHAFEMYSLXNWRKP 427
QCPIV RLTNS+MMHG N GK LM V VKHAFE+ L P
Sbjct: 65 QCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENP 108
Score = 48.0 bits (109), Expect = 2e-05
Identities = 22/26 (84%), Positives = 22/26 (84%)
Frame = +3
Query: 402 IHLXTGENPXXVLVTAIINSGPREDS 479
IHL TGENP VLV AIINSGPREDS
Sbjct: 100 IHLLTGENPLQVLVNAIINSGPREDS 125
>U14970-1|AAA85658.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 111 bits (267), Expect = 2e-24
Identities = 57/104 (54%), Positives = 66/104 (63%)
Frame = +2
Query: 116 PCLYHKPPTFLKSSFSADGVATDVQVSDMSLQDYISVKEKYXXIFTYSAGXYAHKRFRKA 295
P + P L +S D DVQ++D+SLQDYI+VKEKY +SAG YA FRKA
Sbjct: 9 PAVAETPDIKLFGKWSTD----DVQINDISLQDYIAVKEKYAKYLPHSAGRYAANAFRKA 64
Query: 296 QCPIVXRLTNSLMMHGXNTGKXLMAVXXVKHAFEMYSLXNWRKP 427
QCPIV RLTNS+MMHG N GK LM V VKHAFE+ L P
Sbjct: 65 QCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENP 108
Score = 48.0 bits (109), Expect = 2e-05
Identities = 22/26 (84%), Positives = 22/26 (84%)
Frame = +3
Query: 402 IHLXTGENPXXVLVTAIINSGPREDS 479
IHL TGENP VLV AIINSGPREDS
Sbjct: 100 IHLLTGENPLQVLVNAIINSGPREDS 125
>AB209803-1|BAD93040.1| 107|Homo sapiens ribosomal protein S5
variant protein.
Length = 107
Score = 61.7 bits (143), Expect = 2e-09
Identities = 28/39 (71%), Positives = 30/39 (76%)
Frame = +2
Query: 293 AQCPIVXRLTNSLMMHGXNTGKXLMAVXXVKHAFEMYSL 409
AQCPIV RLTNS+MMHG N GK LM V VKHAFE+ L
Sbjct: 1 AQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHL 39
>AB231860-1|BAE19678.1| 1640|Homo sapiens hypothetical protein
protein.
Length = 1640
Score = 34.3 bits (75), Expect = 0.32
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 356 CQCSDRASLESL*GXPRLGTGLYGNACVHTC 264
C C + ++ E G R G G YG AC H C
Sbjct: 1423 CSCHNNSTCEPATGTCRCGPGFYGQACEHPC 1453
>AL513320-1|CAI14334.1| 1229|Homo sapiens multiple EGF-like-domains 6
protein.
Length = 1229
Score = 31.1 bits (67), Expect = 3.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 356 CQCSDRASLESL*GXPRLGTGLYGNACVH 270
C C + ++ E G R G G YG AC H
Sbjct: 1113 CSCHNNSTCEPATGTCRCGPGFYGQACEH 1141
>AL512413-3|CAH70834.1| 1229|Homo sapiens multiple EGF-like-domains 6
protein.
Length = 1229
Score = 31.1 bits (67), Expect = 3.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 356 CQCSDRASLESL*GXPRLGTGLYGNACVH 270
C C + ++ E G R G G YG AC H
Sbjct: 1113 CSCHNNSTCEPATGTCRCGPGFYGQACEH 1141
>AB011539-1|BAA32467.2| 1246|Homo sapiens MEGF6 protein.
Length = 1246
Score = 31.1 bits (67), Expect = 3.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 356 CQCSDRASLESL*GXPRLGTGLYGNACVH 270
C C + ++ E G R G G YG AC H
Sbjct: 1130 CSCHNNSTCEPATGTCRCGPGFYGQACEH 1158
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,375,439
Number of Sequences: 237096
Number of extensions: 1273582
Number of successful extensions: 1921
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1916
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6155099854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -