Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0784
         (588 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical pr...    96   2e-20
U58737-2|AAM69081.1|  479|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U58737-1|ABC48238.1|  474|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z81524-1|CAB04249.1|  356|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical
           protein T05E11.1 protein.
          Length = 210

 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 48/81 (59%), Positives = 53/81 (65%)
 Frame = +2

Query: 185 VQVSDMSLQDYISVKEKYXXIFTYSAGXYAHKRFRKAQCPIVXRLTNSLMMHGXNTGKXL 364
           V VSD+SL DYI VKEK      +SAG +  +RFRKA CPIV RL NSLMMHG N GK L
Sbjct: 34  VNVSDISLVDYIPVKEKSAKYLPHSAGRFQVRRFRKAACPIVERLANSLMMHGRNNGKKL 93

Query: 365 MAVXXVKHAFEMYSLXNWRKP 427
           M V  VKHAFE+  L     P
Sbjct: 94  MTVRIVKHAFEIIYLLTGENP 114



 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 20/26 (76%), Positives = 22/26 (84%)
 Frame = +3

Query: 402 IHLXTGENPXXVLVTAIINSGPREDS 479
           I+L TGENP  VLV A+INSGPREDS
Sbjct: 106 IYLLTGENPVQVLVNAVINSGPREDS 131


>U58737-2|AAM69081.1|  479|Caenorhabditis elegans Hypothetical
           protein ZK54.1a protein.
          Length = 479

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -1

Query: 420 LQLXSEYISNACLTXXTAISXLPVFXPCIIREFVRRSTIGHW 295
           L L  +Y  +   T  T  +   +F P ++   V+  TIG W
Sbjct: 397 LDLAPQYAGHLMATSNTFATIPGIFGPLLVGAIVQNGTIGEW 438


>U58737-1|ABC48238.1|  474|Caenorhabditis elegans Hypothetical
           protein ZK54.1b protein.
          Length = 474

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -1

Query: 420 LQLXSEYISNACLTXXTAISXLPVFXPCIIREFVRRSTIGHW 295
           L L  +Y  +   T  T  +   +F P ++   V+  TIG W
Sbjct: 392 LDLAPQYAGHLMATSNTFATIPGIFGPLLVGAIVQNGTIGEW 433


>Z81524-1|CAB04249.1|  356|Caenorhabditis elegans Hypothetical
           protein F32H5.1 protein.
          Length = 356

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = +2

Query: 116 PCLYHKPPTFLKSSFSADGVATDVQVSDMSLQDYISVKEKYXXIFTYSAGXYAH 277
           P  Y +   F K+ ++     TD+Q+  M+    I+    Y   + Y  G Y H
Sbjct: 236 PIAYKQDKHFGKAHYNVGKKMTDIQIEIMTNGPVIASFIIYDDFWDYKTGIYVH 289


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,599,675
Number of Sequences: 27780
Number of extensions: 201877
Number of successful extensions: 333
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)