Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0784
         (588 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   3.9  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   9.0  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.0  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   9.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.0  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   9.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.0  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -1

Query: 327 EFVRRSTIGHWALRKRLCAYXPAE 256
           EF R  T    AL K+LC   PAE
Sbjct: 585 EFPRSITRNATALIKKLCRDNPAE 608


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 485 LVRIFTGSRVDNGSHE 438
           +VRIF G + D   HE
Sbjct: 513 MVRIFLGPKYDEFGHE 528


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = -1

Query: 336 IIREFVRRSTIGHWAL 289
           +++E +R+   GHW +
Sbjct: 66  LMKERIRQKAAGHWVI 81


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = -1

Query: 336 IIREFVRRSTIGHWAL 289
           +++E +R+   GHW +
Sbjct: 66  LMKERIRQKAAGHWVI 81


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 485 LVRIFTGSRVDNGSHE 438
           +VRIF G + D   HE
Sbjct: 513 MVRIFLGPKYDEFGHE 528


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = -1

Query: 336 IIREFVRRSTIGHWAL 289
           +++E +R+   GHW +
Sbjct: 66  LMKERIRQKAAGHWVI 81


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 485 LVRIFTGSRVDNGSHE 438
           +VRIF G + D   HE
Sbjct: 139 MVRIFLGPKYDEFGHE 154


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +1

Query: 34  FSNRKVPIMAEENWN 78
           F N+K+P+   E W+
Sbjct: 550 FKNKKLPVFLAEIWD 564


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,088
Number of Sequences: 438
Number of extensions: 2331
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)